RNA–Protein interactions for RNA: ENST00000219281.7

USB1-201, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USB1, Length 2,282 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-201ENST00000219281 SMG6Q86US8 1419 aaKnown RBP23.45■■□□□ 1.34
USB1-201ENST00000219281 PLCH2O75038 1416 aa23.45■■□□□ 1.34
USB1-201ENST00000219281 ARHGEF12Q9NZN5 1544 aa23.43■■□□□ 1.34
USB1-201ENST00000219281 KDM5DQ9BY66 1539 aa23.43■■□□□ 1.34
USB1-201ENST00000219281 UHRF1BP1Q6BDS2 1440 aa23.43■■□□□ 1.34
USB1-201ENST00000219281 CARD11Q9BXL7 1154 aa23.43■■□□□ 1.34
USB1-201ENST00000219281 MYO5CQ9NQX4 1742 aa23.43■■□□□ 1.34
USB1-201ENST00000219281 NUDCQ9Y266 331 aa23.42■■□□□ 1.34
USB1-201ENST00000219281 RALGAPBQ86X10 1494 aa23.4■■□□□ 1.34
USB1-201ENST00000219281 KDM2AQ9Y2K7 1162 aa23.4■■□□□ 1.34
USB1-201ENST00000219281 SENP3-EIF4A1A0A087X0R7 540 aa23.39■■□□□ 1.34
USB1-201ENST00000219281 ERICH6Q7L0X2 663 aa23.39■■□□□ 1.34
USB1-201ENST00000219281 ROCK2O75116 1388 aaKnown RBP23.39■■□□□ 1.34
USB1-201ENST00000219281 MAST1Q9Y2H9 1570 aa23.39■■□□□ 1.33
USB1-201ENST00000219281 EFCAB2Q5VUJ9 269 aa23.39■■□□□ 1.33
USB1-201ENST00000219281 PLEKHH2Q8IVE3 1493 aa23.38■■□□□ 1.33
USB1-201ENST00000219281 PNISRQ8TF01 805 aaKnown RBP23.38■■□□□ 1.33
USB1-201ENST00000219281 TMC1Q8TDI8 760 aa23.37■■□□□ 1.33
USB1-201ENST00000219281 ST20-MTHFSA0A0A6YYL1 179 aa23.35■■□□□ 1.33
USB1-201ENST00000219281 DCAF11Q8TEB1 546 aa23.34■■□□□ 1.33
USB1-201ENST00000219281 RNF123Q5XPI4 1314 aa23.33■■□□□ 1.33
USB1-201ENST00000219281 FAM135AQ9P2D6 1515 aa23.32■■□□□ 1.32
USB1-201ENST00000219281 TRAPPC8Q9Y2L5 1435 aa23.31■■□□□ 1.32
USB1-201ENST00000219281 OSCARQ8IYS5 282 aa23.3■■□□□ 1.32
USB1-201ENST00000219281 PLXNC1O60486 1568 aa23.29■■□□□ 1.32
USB1-201ENST00000219281 ABCC1P33527 1531 aa23.28■■□□□ 1.32
USB1-201ENST00000219281 WDR7Q9Y4E6 1490 aa23.28■■□□□ 1.32
USB1-201ENST00000219281 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.28■■□□□ 1.32
USB1-201ENST00000219281 CCDC136Q96JN2 1154 aa23.27■■□□□ 1.32
USB1-201ENST00000219281 AFAP1Q8N556 730 aa23.26■■□□□ 1.31
USB1-201ENST00000219281 MYBBP1AQ9BQG0 1328 aaKnown RBP23.25■■□□□ 1.31
USB1-201ENST00000219281 UNC13BO14795 1591 aa23.24■■□□□ 1.31
USB1-201ENST00000219281 RALBP1Q15311 655 aa23.24■■□□□ 1.31
USB1-201ENST00000219281 DUOX2Q9NRD8 1548 aa23.24■■□□□ 1.31
USB1-201ENST00000219281 BRD4O60885 1362 aaPredicted RBP23.24■■□□□ 1.31
USB1-201ENST00000219281 LRPPRCP42704 1394 aaKnown RBP23.23■■□□□ 1.31
USB1-201ENST00000219281 ARAP3Q8WWN8 1544 aa23.23■■□□□ 1.31
USB1-201ENST00000219281 PLA2R1Q13018 1463 aa23.22■■□□□ 1.31
USB1-201ENST00000219281 BCL11AQ9H165 835 aa23.21■■□□□ 1.31
USB1-201ENST00000219281 KTN1Q86UP2 1357 aaKnown RBP23.21■■□□□ 1.31
USB1-201ENST00000219281 ERBINQ96RT1 1412 aa23.2■■□□□ 1.3
USB1-201ENST00000219281 ASXL2Q76L83 1435 aa23.19■■□□□ 1.3
USB1-201ENST00000219281 SPAG9O60271 1321 aaKnown RBP23.19■■□□□ 1.3
USB1-201ENST00000219281 RGL3Q3MIN7 710 aa23.16■■□□□ 1.3
USB1-201ENST00000219281 RTEL1-TNFRSF6BF6WH68 1400 aa23.16■■□□□ 1.3
USB1-201ENST00000219281 MAGI2Q86UL8 1455 aa23.16■■□□□ 1.3
USB1-201ENST00000219281 IQGAP3Q86VI3 1631 aa23.16■■□□□ 1.3
USB1-201ENST00000219281 FANCAO15360 1455 aa23.16■■□□□ 1.3
USB1-201ENST00000219281 ABCA9Q8IUA7 1624 aa23.16■■□□□ 1.3
USB1-201ENST00000219281 E9PCH4 1651 aa23.16■■□□□ 1.3
USB1-201ENST00000219281 CCDC144AA2RUR9 1427 aa23.15■■□□□ 1.3
USB1-201ENST00000219281 PRAG1Q86YV5 1406 aa23.15■■□□□ 1.3
USB1-201ENST00000219281 NBPF1Q3BBV0 1214 aa23.14■■□□□ 1.29
USB1-201ENST00000219281 SALL2Q9Y467 1007 aaPredicted RBP23.12■■□□□ 1.29
USB1-201ENST00000219281 NLRP13Q86W25 1043 aa23.12■■□□□ 1.29
USB1-201ENST00000219281 NOP58Q9Y2X3 529 aaKnown RBP23.11■■□□□ 1.29
USB1-201ENST00000219281 ZFYVE16Q7Z3T8 1539 aa23.11■■□□□ 1.29
USB1-201ENST00000219281 TRPM1Q7Z4N2 1603 aa23.11■■□□□ 1.29
USB1-201ENST00000219281 RRP1P56182 461 aaKnown RBP23.1■■□□□ 1.29
USB1-201ENST00000219281 PARD3Q8TEW0 1356 aa23.1■■□□□ 1.29
USB1-201ENST00000219281 SCAPERQ9BY12 1400 aa23.09■■□□□ 1.29
USB1-201ENST00000219281 PER1O15534 1290 aaPredicted RBP23.08■■□□□ 1.29
USB1-201ENST00000219281 ATP10AO60312 1499 aa23.07■■□□□ 1.28
USB1-201ENST00000219281 NPM1P06748 294 aaKnown RBP eCLIP23.07■■□□□ 1.28
USB1-201ENST00000219281 RCAN3Q9UKA8 241 aa23.07■■□□□ 1.28
USB1-201ENST00000219281 ADGRL1O94910 1474 aa23.06■■□□□ 1.28
USB1-201ENST00000219281 PAK3O75914 559 aaPredicted RBP23.06■■□□□ 1.28
USB1-201ENST00000219281 EXOC6Q8TAG9 804 aa23.05■■□□□ 1.28
USB1-201ENST00000219281 A2MP01023 1474 aa23.05■■□□□ 1.28
USB1-201ENST00000219281 GPRASP1Q5JY77 1395 aa23.04■■□□□ 1.28
USB1-201ENST00000219281 CC2D1BQ5T0F9 858 aaKnown RBP23.03■■□□□ 1.28
USB1-201ENST00000219281 ATP7AQ04656 1500 aa23.03■■□□□ 1.28
USB1-201ENST00000219281 ANP32AP39687 249 aaKnown RBP23.02■■□□□ 1.28
USB1-201ENST00000219281 PDE3BQ13370 1112 aa23.02■■□□□ 1.28
USB1-201ENST00000219281 TESK2Q96S53 571 aa23.02■■□□□ 1.28
USB1-201ENST00000219281 DISP3Q9P2K9 1392 aa23.02■■□□□ 1.28
USB1-201ENST00000219281 INO80Q9ULG1 1556 aaPredicted RBP23.02■■□□□ 1.27
USB1-201ENST00000219281 COL17A1Q9UMD9 1497 aaPredicted RBP23.01■■□□□ 1.27
USB1-201ENST00000219281 MYT1LQ9UL68 1186 aa23■■□□□ 1.27
USB1-201ENST00000219281 IPO9Q96P70 1041 aaKnown RBP22.99■■□□□ 1.27
USB1-201ENST00000219281 PANK3Q9H999 370 aa22.99■■□□□ 1.27
USB1-201ENST00000219281 CDCA7LQ96GN5 454 aa22.99■■□□□ 1.27
USB1-201ENST00000219281 PRDM15P57071 1507 aaPredicted RBP22.98■■□□□ 1.27
USB1-201ENST00000219281 KIF3BO15066 747 aa22.97■■□□□ 1.27
USB1-201ENST00000219281 WASHC2CQ9Y4E1 1318 aa22.97■■□□□ 1.27
USB1-201ENST00000219281 DEPDC5O75140 1603 aa22.96■■□□□ 1.27
USB1-201ENST00000219281 NBR1Q14596 966 aa22.96■■□□□ 1.27
USB1-201ENST00000219281 CD109Q6YHK3 1445 aa22.95■■□□□ 1.26
USB1-201ENST00000219281 LAMC1P11047 1609 aa22.95■■□□□ 1.26
USB1-201ENST00000219281 TMF1P82094 1093 aa22.94■■□□□ 1.26
USB1-201ENST00000219281 PTPRTO14522 1441 aa22.93■■□□□ 1.26
USB1-201ENST00000219281 ZBTB47Q9UFB7 747 aaPredicted RBP22.92■■□□□ 1.26
USB1-201ENST00000219281 VWDEQ8N2E2 1590 aa22.92■■□□□ 1.26
USB1-201ENST00000219281 DEKP35659 375 aaKnown RBP22.91■■□□□ 1.26
USB1-201ENST00000219281 EIF2AK4Q9P2K8 1649 aaKnown RBP22.91■■□□□ 1.26
USB1-201ENST00000219281 KIDINS220Q9ULH0 1771 aa22.9■■□□□ 1.26
USB1-201ENST00000219281 BLMP54132 1417 aaPredicted RBP22.9■■□□□ 1.26
USB1-201ENST00000219281 TCERG1O14776 1098 aaKnown RBP22.9■■□□□ 1.26
USB1-201ENST00000219281 ZNF518AQ6AHZ1 1483 aa22.89■■□□□ 1.25
USB1-201ENST00000219281 PLIN1O60240 522 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms