RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 KCNJ4P48050 445 aa17.67■□□□□ 0.42
SIX4-201ENST00000216513 FGD1P98174 961 aa17.67■□□□□ 0.42
SIX4-201ENST00000216513 ANKLE2Q86XL3 938 aa17.67■□□□□ 0.42
SIX4-201ENST00000216513 RAB3GAP2Q9H2M9 1393 aa17.66■□□□□ 0.42
SIX4-201ENST00000216513 STRN4Q9NRL3 753 aa17.66■□□□□ 0.42
SIX4-201ENST00000216513 APBB1O00213 710 aa17.65■□□□□ 0.42
SIX4-201ENST00000216513 NGEFQ8N5V2 710 aa17.65■□□□□ 0.42
SIX4-201ENST00000216513 FRAT2O75474 233 aaPredicted RBP17.64■□□□□ 0.41
SIX4-201ENST00000216513 EVC2Q86UK5 1308 aa17.64■□□□□ 0.41
SIX4-201ENST00000216513 GORABQ5T7V8 394 aa17.63■□□□□ 0.41
SIX4-201ENST00000216513 STK31Q9BXU1 1019 aa17.62■□□□□ 0.41
SIX4-201ENST00000216513 KTN1Q86UP2 1357 aaKnown RBP17.62■□□□□ 0.41
SIX4-201ENST00000216513 NLRP2Q9NX02 1062 aa17.62■□□□□ 0.41
SIX4-201ENST00000216513 L3MBTL2Q969R5 705 aa17.61■□□□□ 0.41
SIX4-201ENST00000216513 SCAPERQ9BY12 1400 aa17.61■□□□□ 0.41
SIX4-201ENST00000216513 TTC5Q8N0Z6 440 aa17.6■□□□□ 0.41
SIX4-201ENST00000216513 KIF15Q9NS87 1388 aa17.6■□□□□ 0.41
SIX4-201ENST00000216513 POLA1P09884 1462 aaPredicted RBP17.6■□□□□ 0.41
SIX4-201ENST00000216513 CALD1Q05682 793 aaKnown RBP17.59■□□□□ 0.41
SIX4-201ENST00000216513 SLC26A8Q96RN1 970 aa17.59■□□□□ 0.41
SIX4-201ENST00000216513 CHMP4BQ9H444 224 aaKnown RBP17.59■□□□□ 0.41
SIX4-201ENST00000216513 HMGXB3Q12766 1538 aa17.59■□□□□ 0.41
SIX4-201ENST00000216513 TMEM132EQ6IEE7 984 aa17.57■□□□□ 0.4
SIX4-201ENST00000216513 TEFQ10587 303 aa17.56■□□□□ 0.4
SIX4-201ENST00000216513 CLSTN1O94985 981 aa17.56■□□□□ 0.4
SIX4-201ENST00000216513 SLC4A10Q6U841 1118 aa17.56■□□□□ 0.4
SIX4-201ENST00000216513 PMFBP1Q8TBY8 1022 aa17.55■□□□□ 0.4
SIX4-201ENST00000216513 MS4A1P11836 297 aa17.55■□□□□ 0.4
SIX4-201ENST00000216513 FBXW7Q969H0 707 aa17.55■□□□□ 0.4
SIX4-201ENST00000216513 GPRASP1Q5JY77 1395 aa17.55■□□□□ 0.4
SIX4-201ENST00000216513 RAPGEF4Q8WZA2 1011 aa17.55■□□□□ 0.4
SIX4-201ENST00000216513 CCDC146Q8IYE0 955 aa17.53■□□□□ 0.4
SIX4-201ENST00000216513 DHX57Q6P158 1386 aaKnown RBP17.53■□□□□ 0.4
SIX4-201ENST00000216513 CEBPAP49715 358 aaPredicted RBP17.53■□□□□ 0.4
SIX4-201ENST00000216513 LAMC3Q9Y6N6 1575 aa17.53■□□□□ 0.4
SIX4-201ENST00000216513 MYOM3Q5VTT5 1437 aa17.53■□□□□ 0.4
SIX4-201ENST00000216513 NLRP6P59044 892 aa17.52■□□□□ 0.4
SIX4-201ENST00000216513 ABTB2Q8N961 1025 aa17.52■□□□□ 0.4
SIX4-201ENST00000216513 CD109Q6YHK3 1445 aa17.51■□□□□ 0.39
SIX4-201ENST00000216513 CHMP4AQ9BY43 222 aa17.51■□□□□ 0.39
SIX4-201ENST00000216513 XPCQ01831 940 aaPredicted RBP17.51■□□□□ 0.39
SIX4-201ENST00000216513 PLCB2Q00722 1185 aa17.5■□□□□ 0.39
SIX4-201ENST00000216513 NCBP3Q53F19 620 aaKnown RBP17.5■□□□□ 0.39
SIX4-201ENST00000216513 DNMBPQ6XZF7 1577 aa17.48■□□□□ 0.39
SIX4-201ENST00000216513 EIF2S2P20042 333 aaKnown RBP17.48■□□□□ 0.39
SIX4-201ENST00000216513 ST20-MTHFSA0A0A6YYL1 179 aa17.48■□□□□ 0.39
SIX4-201ENST00000216513 CABP2Q9NPB3 220 aa17.48■□□□□ 0.39
SIX4-201ENST00000216513 CGNL1Q0VF96 1302 aa17.47■□□□□ 0.39
SIX4-201ENST00000216513 LMOD3Q0VAK6 560 aa17.46■□□□□ 0.39
SIX4-201ENST00000216513 DMRT2Q9Y5R5 561 aa17.46■□□□□ 0.39
SIX4-201ENST00000216513 ADAMTS2O95450 1211 aa17.46■□□□□ 0.39
SIX4-201ENST00000216513 NECTIN2Q92692 538 aa17.45■□□□□ 0.38
SIX4-201ENST00000216513 RRP7AQ9Y3A4 280 aaKnown RBP17.45■□□□□ 0.38
SIX4-201ENST00000216513 IPO8O15397 1037 aaKnown RBP17.45■□□□□ 0.38
SIX4-201ENST00000216513 BICRAQ9NZM4 1560 aa17.44■□□□□ 0.38
SIX4-201ENST00000216513 TIMELESSQ9UNS1 1208 aa17.44■□□□□ 0.38
SIX4-201ENST00000216513 ZRSR1Q15695 479 aaKnown RBP17.44■□□□□ 0.38
SIX4-201ENST00000216513 TOM1L2Q6ZVM7 507 aa17.44■□□□□ 0.38
SIX4-201ENST00000216513 RBM33Q96EV2 1170 aaKnown RBP17.44■□□□□ 0.38
SIX4-201ENST00000216513 ELL2O00472 640 aaPredicted RBP17.44■□□□□ 0.38
SIX4-201ENST00000216513 ITPRIPQ8IWB1 547 aa17.44■□□□□ 0.38
SIX4-201ENST00000216513 PANK3Q9H999 370 aa17.44■□□□□ 0.38
SIX4-201ENST00000216513 PDE3BQ13370 1112 aa17.43■□□□□ 0.38
SIX4-201ENST00000216513 UBAP1LF5GYI3 381 aa17.42■□□□□ 0.38
SIX4-201ENST00000216513 RBM42Q9BTD8 480 aaKnown RBP17.42■□□□□ 0.38
SIX4-201ENST00000216513 CENPJQ9HC77 1338 aaPredicted RBP17.41■□□□□ 0.38
SIX4-201ENST00000216513 SYNJ1O43426 1573 aa17.41■□□□□ 0.38
SIX4-201ENST00000216513 CUX1P39880 1505 aa17.41■□□□□ 0.38
SIX4-201ENST00000216513 DDX54Q8TDD1 881 aaKnown RBP17.4■□□□□ 0.38
SIX4-201ENST00000216513 FAM177BA6PVY3 158 aa17.39■□□□□ 0.38
SIX4-201ENST00000216513 PRAM1Q96QH2 718 aa17.39■□□□□ 0.38
SIX4-201ENST00000216513 PRDM11Q9NQV5 511 aa17.39■□□□□ 0.38
SIX4-201ENST00000216513 ANKRD50Q9ULJ7 1429 aa17.39■□□□□ 0.37
SIX4-201ENST00000216513 SMC4Q9NTJ3 1288 aa17.38■□□□□ 0.37
SIX4-201ENST00000216513 RALBP1Q15311 655 aa17.38■□□□□ 0.37
SIX4-201ENST00000216513 NGLY1Q96IV0 654 aa17.37■□□□□ 0.37
SIX4-201ENST00000216513 RAD21O60216 631 aa17.37■□□□□ 0.37
SIX4-201ENST00000216513 PPP6R1Q9UPN7 881 aa17.37■□□□□ 0.37
SIX4-201ENST00000216513 TRIM34Q9BYJ4 488 aa17.36■□□□□ 0.37
SIX4-201ENST00000216513 TOMM22Q9NS69 142 aa17.36■□□□□ 0.37
SIX4-201ENST00000216513 ZNF608Q9ULD9 1512 aaPredicted RBP17.36■□□□□ 0.37
SIX4-201ENST00000216513 HDAC5Q9UQL6 1122 aa17.35■□□□□ 0.37
SIX4-201ENST00000216513 GGNBP2Q9H3C7 697 aa17.35■□□□□ 0.37
SIX4-201ENST00000216513 CFAP70Q5T0N1 1121 aa17.35■□□□□ 0.37
SIX4-201ENST00000216513 CWC22Q9HCG8 908 aaKnown RBP17.35■□□□□ 0.37
SIX4-201ENST00000216513 VPS37DQ86XT2 251 aa17.34■□□□□ 0.37
SIX4-201ENST00000216513 NCOA2Q15596 1464 aa17.34■□□□□ 0.37
SIX4-201ENST00000216513 BECN1Q14457 450 aa17.34■□□□□ 0.37
SIX4-201ENST00000216513 PTMAP06454 111 aaKnown RBP17.33■□□□□ 0.37
SIX4-201ENST00000216513 NEXNQ0ZGT2 675 aa17.33■□□□□ 0.37
SIX4-201ENST00000216513 GNL2Q13823 731 aaKnown RBP17.33■□□□□ 0.36
SIX4-201ENST00000216513 DIAPH1O60610 1272 aaKnown RBP17.33■□□□□ 0.36
SIX4-201ENST00000216513 HMOX1P09601 288 aa17.33■□□□□ 0.36
SIX4-201ENST00000216513 KIAA0586Q9BVV6 1533 aa17.33■□□□□ 0.36
SIX4-201ENST00000216513 KIAA1211Q6ZU35 1233 aa17.32■□□□□ 0.36
SIX4-201ENST00000216513 ARID3AQ99856 593 aa17.32■□□□□ 0.36
SIX4-201ENST00000216513 SLC52A1Q9NWF4 448 aa17.32■□□□□ 0.36
SIX4-201ENST00000216513 PLEKHH2Q8IVE3 1493 aa17.32■□□□□ 0.36
SIX4-201ENST00000216513 TRIM44Q96DX7 344 aaPredicted RBP17.32■□□□□ 0.36
SIX4-201ENST00000216513 CASKIN1Q8WXD9 1431 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms