RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 MSH5O43196 834 aa17.93■□□□□ 0.46
CTNS-201ENST00000046640 CCDC144AA2RUR9 1427 aa17.92■□□□□ 0.46
CTNS-201ENST00000046640 EFCAB2Q5VUJ9 269 aa17.92■□□□□ 0.46
CTNS-201ENST00000046640 ARHGEF12Q9NZN5 1544 aa17.92■□□□□ 0.46
CTNS-201ENST00000046640 SHROOM2Q13796 1616 aa17.91■□□□□ 0.46
CTNS-201ENST00000046640 DHX29Q7Z478 1369 aaKnown RBP17.9■□□□□ 0.46
CTNS-201ENST00000046640 KDM5CP41229 1560 aa17.88■□□□□ 0.45
CTNS-201ENST00000046640 UHRF1BP1Q6BDS2 1440 aa17.88■□□□□ 0.45
CTNS-201ENST00000046640 B4GALNT3Q6L9W6 998 aa17.87■□□□□ 0.45
CTNS-201ENST00000046640 RALGAPBQ86X10 1494 aa17.87■□□□□ 0.45
CTNS-201ENST00000046640 KDM5DQ9BY66 1539 aa17.87■□□□□ 0.45
CTNS-201ENST00000046640 TRAPPC8Q9Y2L5 1435 aa17.87■□□□□ 0.45
CTNS-201ENST00000046640 PLA2R1Q13018 1463 aa17.86■□□□□ 0.45
CTNS-201ENST00000046640 ERICH6Q7L0X2 663 aa17.85■□□□□ 0.45
CTNS-201ENST00000046640 TMC1Q8TDI8 760 aa17.85■□□□□ 0.45
CTNS-201ENST00000046640 PLCH2O75038 1416 aa17.85■□□□□ 0.45
CTNS-201ENST00000046640 SPAG9O60271 1321 aaKnown RBP17.83■□□□□ 0.45
CTNS-201ENST00000046640 MYO5CQ9NQX4 1742 aa17.83■□□□□ 0.45
CTNS-201ENST00000046640 ZCCHC11Q5TAX3 1644 aaKnown RBP17.83■□□□□ 0.44
CTNS-201ENST00000046640 ZBED9Q6R2W3 1325 aa17.82■□□□□ 0.44
CTNS-201ENST00000046640 SALL2Q9Y467 1007 aaPredicted RBP17.81■□□□□ 0.44
CTNS-201ENST00000046640 PRAG1Q86YV5 1406 aa17.8■□□□□ 0.44
CTNS-201ENST00000046640 POLR1AO95602 1720 aaPredicted RBP17.79■□□□□ 0.44
CTNS-201ENST00000046640 A2MP01023 1474 aa17.78■□□□□ 0.44
CTNS-201ENST00000046640 CLASP1Q7Z460 1538 aa17.78■□□□□ 0.44
CTNS-201ENST00000046640 ARID4BQ4LE39 1312 aaPredicted RBP17.78■□□□□ 0.44
CTNS-201ENST00000046640 PPP4R2Q9NY27 417 aa17.77■□□□□ 0.44
CTNS-201ENST00000046640 CC2D1BQ5T0F9 858 aaKnown RBP17.77■□□□□ 0.44
CTNS-201ENST00000046640 PNISRQ8TF01 805 aaKnown RBP17.76■□□□□ 0.43
CTNS-201ENST00000046640 KIF3BO15066 747 aa17.76■□□□□ 0.43
CTNS-201ENST00000046640 DUOX2Q9NRD8 1548 aa17.75■□□□□ 0.43
CTNS-201ENST00000046640 MAST1Q9Y2H9 1570 aa17.74■□□□□ 0.43
CTNS-201ENST00000046640 UNC13BO14795 1591 aa17.73■□□□□ 0.43
CTNS-201ENST00000046640 DISP3Q9P2K9 1392 aa17.72■□□□□ 0.43
CTNS-201ENST00000046640 ABCC1P33527 1531 aa17.72■□□□□ 0.43
CTNS-201ENST00000046640 ERBINQ96RT1 1412 aa17.71■□□□□ 0.43
CTNS-201ENST00000046640 SCAPERQ9BY12 1400 aa17.71■□□□□ 0.43
CTNS-201ENST00000046640 TESK2Q96S53 571 aa17.71■□□□□ 0.43
CTNS-201ENST00000046640 UHRF1BP1LA0JNW5 1464 aa17.71■□□□□ 0.43
CTNS-201ENST00000046640 PLXNC1O60486 1568 aa17.71■□□□□ 0.43
CTNS-201ENST00000046640 PANK3Q9H999 370 aa17.71■□□□□ 0.43
CTNS-201ENST00000046640 MYBBP1AQ9BQG0 1328 aaKnown RBP17.69■□□□□ 0.42
CTNS-201ENST00000046640 IQGAP3Q86VI3 1631 aa17.69■□□□□ 0.42
CTNS-201ENST00000046640 TRPM1Q7Z4N2 1603 aa17.68■□□□□ 0.42
CTNS-201ENST00000046640 FANCIQ9NVI1 1328 aa17.68■□□□□ 0.42
CTNS-201ENST00000046640 FANCAO15360 1455 aa17.68■□□□□ 0.42
CTNS-201ENST00000046640 RALBP1Q15311 655 aa17.67■□□□□ 0.42
CTNS-201ENST00000046640 WDR7Q9Y4E6 1490 aa17.67■□□□□ 0.42
CTNS-201ENST00000046640 PER1O15534 1290 aaPredicted RBP17.66■□□□□ 0.42
CTNS-201ENST00000046640 TMF1P82094 1093 aa17.66■□□□□ 0.42
CTNS-201ENST00000046640 NUDCQ9Y266 331 aa17.65■□□□□ 0.42
CTNS-201ENST00000046640 KTN1Q86UP2 1357 aaKnown RBP17.65■□□□□ 0.42
CTNS-201ENST00000046640 CHGAP10645 457 aaKnown RBP17.64■□□□□ 0.41
CTNS-201ENST00000046640 GPRASP1Q5JY77 1395 aa17.63■□□□□ 0.41
CTNS-201ENST00000046640 NPM1P06748 294 aaKnown RBP eCLIP17.63■□□□□ 0.41
CTNS-201ENST00000046640 ASXL2Q76L83 1435 aa17.63■□□□□ 0.41
CTNS-201ENST00000046640 ADGRL1O94910 1474 aa17.63■□□□□ 0.41
CTNS-201ENST00000046640 NLRP13Q86W25 1043 aa17.62■□□□□ 0.41
CTNS-201ENST00000046640 MAGI2Q86UL8 1455 aa17.62■□□□□ 0.41
CTNS-201ENST00000046640 ZFYVE16Q7Z3T8 1539 aa17.62■□□□□ 0.41
CTNS-201ENST00000046640 SENP3Q9H4L4 574 aaPredicted RBP17.61■□□□□ 0.41
CTNS-201ENST00000046640 BRD4O60885 1362 aaPredicted RBP17.6■□□□□ 0.41
CTNS-201ENST00000046640 GGT6Q6P531 493 aa17.6■□□□□ 0.41
CTNS-201ENST00000046640 ATP10AO60312 1499 aa17.6■□□□□ 0.41
CTNS-201ENST00000046640 NBR1Q14596 966 aa17.6■□□□□ 0.41
CTNS-201ENST00000046640 OSCARQ8IYS5 282 aa17.6■□□□□ 0.41
CTNS-201ENST00000046640 KANK1Q14678 1352 aa17.6■□□□□ 0.41
CTNS-201ENST00000046640 SMG6Q86US8 1419 aaKnown RBP17.59■□□□□ 0.41
CTNS-201ENST00000046640 ERICH6BQ5W0A0 696 aa17.59■□□□□ 0.41
CTNS-201ENST00000046640 E9PCH4 1651 aa17.59■□□□□ 0.41
CTNS-201ENST00000046640 CFAP70Q5T0N1 1121 aa17.59■□□□□ 0.41
CTNS-201ENST00000046640 RTEL1-TNFRSF6BF6WH68 1400 aa17.58■□□□□ 0.41
CTNS-201ENST00000046640 COL17A1Q9UMD9 1497 aaPredicted RBP17.58■□□□□ 0.4
CTNS-201ENST00000046640 CCDC136Q96JN2 1154 aa17.58■□□□□ 0.4
CTNS-201ENST00000046640 PARD3Q8TEW0 1356 aa17.57■□□□□ 0.4
CTNS-201ENST00000046640 PRDM15P57071 1507 aaPredicted RBP17.57■□□□□ 0.4
CTNS-201ENST00000046640 ATP7AQ04656 1500 aa17.57■□□□□ 0.4
CTNS-201ENST00000046640 UGGT1Q9NYU2 1555 aa17.57■□□□□ 0.4
CTNS-201ENST00000046640 CDCA7LQ96GN5 454 aa17.56■□□□□ 0.4
CTNS-201ENST00000046640 LRPPRCP42704 1394 aaKnown RBP17.56■□□□□ 0.4
CTNS-201ENST00000046640 ADGRF5Q8IZF2 1346 aa17.55■□□□□ 0.4
CTNS-201ENST00000046640 KNSTRNQ9Y448 316 aa17.54■□□□□ 0.4
CTNS-201ENST00000046640 PAK3O75914 559 aaPredicted RBP17.53■□□□□ 0.4
CTNS-201ENST00000046640 NUTM2DQ5VT03 806 aaPredicted RBP17.53■□□□□ 0.4
CTNS-201ENST00000046640 CLTCL1P53675 1640 aa17.52■□□□□ 0.4
CTNS-201ENST00000046640 RAPGEF3O95398 923 aa17.52■□□□□ 0.4
CTNS-201ENST00000046640 EIF2AK4Q9P2K8 1649 aaKnown RBP17.51■□□□□ 0.39
CTNS-201ENST00000046640 PTPRTO14522 1441 aa17.51■□□□□ 0.39
CTNS-201ENST00000046640 TRPM2O94759 1503 aa17.5■□□□□ 0.39
CTNS-201ENST00000046640 ABCA9Q8IUA7 1624 aa17.5■□□□□ 0.39
CTNS-201ENST00000046640 ADAMTS8Q9UP79 889 aa17.49■□□□□ 0.39
CTNS-201ENST00000046640 ARAP3Q8WWN8 1544 aa17.49■□□□□ 0.39
CTNS-201ENST00000046640 CFAP65Q6ZU64 1925 aaKnown RBP17.48■□□□□ 0.39
CTNS-201ENST00000046640 CD109Q6YHK3 1445 aa17.48■□□□□ 0.39
CTNS-201ENST00000046640 MADDQ8WXG6 1647 aa17.48■□□□□ 0.39
CTNS-201ENST00000046640 NOP58Q9Y2X3 529 aaKnown RBP17.48■□□□□ 0.39
CTNS-201ENST00000046640 SPHKAPQ2M3C7 1700 aa17.47■□□□□ 0.39
CTNS-201ENST00000046640 INO80Q9ULG1 1556 aaPredicted RBP17.47■□□□□ 0.39
CTNS-201ENST00000046640 RCAN3Q9UKA8 241 aa17.46■□□□□ 0.39
CTNS-201ENST00000046640 NPM2Q86SE8 214 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms