RNA–Protein interactions for RNA: ENSMUST00000002043.9

Ccdc47-201, Transcript of Coiled-coil domain-containing protein 47, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc47, Length 5,193 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc47-201ENSMUST00000002043 Kif3aP28741 701 aa11.28□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Ddx11Q6AXC6 880 aa11.28□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Nap1l3Q794H2 544 aa11.28□□□□□ -0.6
Ccdc47-201ENSMUST00000002043 Ksr2Q3UVC0 959 aa11.27□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Tpd52l1O54818 204 aa11.26□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Nup155Q99P88 1391 aaKnown RBP11.26□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Hook1Q8BIL5 728 aa11.26□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Cabp1Q9JLK7 227 aa11.26□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Sh3bgrQ9WUZ7 214 aa11.26□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Gm21969J3QJZ1 289 aa11.26□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Zrsr2Q62377 462 aaKnown RBP11.26□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Brpf1B2RRD7 1212 aa11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 CrebrfQ8CDG5 640 aaKnown RBP11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Psme1P97371 249 aa11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Atl3Q91YH5 541 aa11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Stk31Q99MW1 1018 aa11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Kif3cO35066 796 aa11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Slc4a3P16283 1227 aa11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Dusp9Q7TNL7 452 aa11.25□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Birc3O08863 600 aa11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 KinQ8K339 391 aa11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Cluap1Q8R3P7 413 aa11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 SafbD3YXK2 937 aaKnown RBP11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Casq1O09165 405 aa11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Kif16bB1AVY7 1312 aa11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Plekhh2Q8C115 1491 aa11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Dhx8A2A4P0 1244 aaKnown RBP11.24□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Ccdc173A0JLY1 547 aa11.23□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Rnf20Q5DTM8 973 aa11.23□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Rpap1Q80TE0 1409 aa11.23□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Hmgn5Q9JL35 406 aa11.23□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Chmp3Q9CQ10 224 aa11.22□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Carmil1Q6EDY6 1374 aa11.22□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Taf3Q5HZG4 932 aa11.22□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 NaspQ99MD9 773 aaKnown RBP11.22□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Odf2A3KGV1 830 aaKnown RBP11.21□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Stk26Q99JT2 416 aa11.21□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 PhaxQ9JJT9 385 aaKnown RBP11.21□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Ppp1r18Q8BQ30 594 aa11.21□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 GorabQ8BRM2 368 aa11.21□□□□□ -0.61
Ccdc47-201ENSMUST00000002043 Rock1P70335 1354 aa11.21□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Txndc2Q6P902 515 aa11.21□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Chmp4cQ9D7F7 232 aa11.21□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 SlkO54988 1233 aa11.2□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Cetn4Q8K4K1 168 aa11.2□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 WrnO09053 1401 aa11.2□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Ap3b2Q9JME5 1082 aa11.2□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 EzrP26040 586 aaKnown RBP11.2□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Necab1Q8BG18 352 aa11.2□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Tsen2Q6P7W5 460 aa11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Hap1O35668 628 aa11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Cchcr1Q8K2I2 770 aa11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Kri1Q8VDQ9 704 aaKnown RBP11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Kif7B7ZNG0 1348 aa11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Slc4a1apE9PX68 744 aa11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Trim58Q5NCC9 485 aa11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 UvssaQ9D479 717 aa11.19□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Lrrcc1Q69ZB0 1026 aa11.18□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Smg6P61406 1418 aaKnown RBP11.18□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Isy1Q69ZQ2 285 aaKnown RBP11.18□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 G3bp1P97855 465 aaKnown RBP11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Kif4P33174 1231 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Gabpb2P81069 414 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Tceal9Q9DD24 104 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Chaf1aQ9QWF0 911 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Mcm2P97310 904 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Kif3bQ61771 747 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Gripap1Q8VD04 806 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Ggt6Q6PDE7 497 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Ppm1eQ80TL0 749 aa11.17□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 GsdmaQ9EST1 446 aa11.16□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Tnnt1O88346 262 aa11.16□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Sin3aQ60520 1274 aaKnown RBP11.16□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Rabep1O35551 862 aa11.15□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Gtf3c3Q3TMP1 882 aa11.15□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 CrbnQ8C7D2 445 aa11.15□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Wdr78E9PYY5 807 aa11.15□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Utp14aQ640M1 767 aaKnown RBP11.15□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 Znf330Q922H9 316 aa11.15□□□□□ -0.62
Ccdc47-201ENSMUST00000002043 AknaQ80VW7 1404 aa11.15□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Fam184bQ0KK56 942 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Erc2Q6PH08 957 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Noc3lQ8VI84 807 aaKnown RBP11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Ccdc146E9Q9F7 977 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Znhit6Q3UFB2 460 aaKnown RBP11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Ccdc60Q8C4J0 545 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Ubxn4Q8VCH8 506 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Crybg2B7ZCC2 1516 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Cplx1P63040 134 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Krt82Q99M74 516 aa11.14□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Gpatch11Q3UFS4 262 aa11.13□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Tubb6Q922F4 447 aa11.13□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Gcom1E9PZ54 550 aa11.13□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Dctn1O08788 1281 aa11.13□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 MyzapQ3UIJ9 466 aa11.13□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Rec8Q8C5S7 591 aa11.13□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Slc4a10Q5DTL9 1118 aa11.12□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Trim29Q8R2Q0 587 aa11.12□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Fbxo2Q80UW2 297 aa11.12□□□□□ -0.63
Ccdc47-201ENSMUST00000002043 Ccnb3Q810T2 1396 aa11.12□□□□□ -0.63
Retrieved 100 of 22,080 RNA–protein pairs in 17.6 ms