RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	RUP1	Q12242	671 aa		3.6	□□□□□ -1.83
UBX5	YDR330W	MDY2	Q12285	212 aa		3.6	□□□□□ -1.83
UBX5	YDR330W	NDJ1	Q12366	352 aa		3.6	□□□□□ -1.83
UBX5	YDR330W	YAK1	P14680	807 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	AMD1	P15274	810 aa	Known RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	MRPS28	P21771	286 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	SEC62	P21825	274 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	AIM17	P23180	465 aa	Known RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	ZIP1	P31111	875 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	TFC1	P32367	649 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	PTC1	P35182	281 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	ECM15	P35195	104 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	SOR1	P35497	357 aa	Known RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	YHR131C	P38835	850 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	PCF11	P39081	626 aa	Predicted RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	BTT1	P40314	149 aa	Predicted RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	COA1	P40452	197 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	HPM1	P40481	377 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	XBP1	P40489	647 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	GVP36	P40531	326 aa	Known RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	PRP24	P49960	444 aa	Known RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	BOL2	P53082	120 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	YNL010W	P53981	241 aa	Known RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	RPL15B	P54780	204 aa	Predicted RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	REX2	P54964	269 aa	Known RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	SPP2	Q02521	185 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	RMI1	Q02685	241 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	PET117	Q02771	107 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	RPM2	Q02773	1202 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	YDR541C	Q03049	344 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	GAS3	Q03655	524 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	YDR415C	Q04033	374 aa	Predicted RBP	3.59	□□□□□ -1.84
UBX5	YDR330W	NDL1	Q06568	189 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	SOR2	Q07786	357 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	YOL019W	Q08157	551 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	ESA1	Q08649	445 aa		3.59	□□□□□ -1.84
UBX5	YDR330W	ATP6	P00854	259 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	HEM2	P05373	342 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	RPL42A	P0CX27	106 aa	Known RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	RPL42B	P0CX28	106 aa	Known RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	YER190C-B	P0CX94	160 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	YEL077W-A	P0CX95	160 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	YGR296C-B	P0CX96	160 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	YPL283W-B	P0CX97	160 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	YPR204C-A	P0CX98	160 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	YCR099C	P25657	155 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	ACH1	P32316	526 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	DPH5	P32469	300 aa	Predicted RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	PTM1	P32857	523 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	IMP3	P32899	183 aa	Predicted RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	PDX3	P38075	228 aa	Known RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	MAK5	P38112	773 aa	Predicted RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	YIR016W	P40572	265 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	UFE1	P41834	346 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	GCD14	P46959	383 aa	Predicted RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	NOP19	P53317	196 aa	Predicted RBP	3.58	□□□□□ -1.84
UBX5	YDR330W	PNG1	Q02890	363 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	DYN3	Q04949	312 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	ASA1	Q06822	443 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	YEH2	Q07950	538 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	REX4	Q08237	289 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	YOR387C	Q08910	206 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	REX3	Q12090	404 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	ATG34	Q12292	412 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	PSY3	Q12318	242 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	ADF1	Q2V2Q1	113 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	SRN2	Q99176	213 aa		3.58	□□□□□ -1.84
UBX5	YDR330W	DAP2	P18962	818 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	RPB4	P20433	221 aa	Predicted RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	MRPL8	P22353	238 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	DBR1	P24309	405 aa	Known RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	DCC1	P25559	380 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	BUB2	P26448	306 aa	Predicted RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	BUB3	P26449	341 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	PPZ1	P26570	692 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	PHO91	P27514	894 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	ECM25	P32525	599 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	SGE1	P33335	543 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	SKT5	P34226	696 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	FRE2	P36033	711 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	RSM22	P36056	628 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	MMF1	P40185	145 aa	Known RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	GAT2	P40209	560 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	ALG8	P40351	577 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	SEC27	P41811	889 aa	Known RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	ELP2	P42935	788 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	MDV1	P47025	714 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	MDE1	P47095	244 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	GTR2	P53290	341 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	PDR16	P53860	351 aa	Known RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	TDA7	P53882	636 aa	Predicted RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	IBD2	P53892	351 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	NHP10	Q03435	203 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	GOT1	Q03554	138 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	TAF12	Q03761	539 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	SPC2	Q04969	178 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	BNA5	Q05979	453 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	MRPL51	Q06090	140 aa	Predicted RBP	3.57	□□□□□ -1.84
UBX5	YDR330W	VPS74	Q06385	345 aa		3.57	□□□□□ -1.84
UBX5	YDR330W	YPQ1	Q12010	308 aa		3.57	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms