RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 SUGP1Q8IWZ8 645 aaKnown RBP20.19■□□□□ 0.82
CIITA-215ENST00000637439 LINC01465Q8N7H1 131 aa20.19■□□□□ 0.82
CIITA-215ENST00000637439 VN1R2Q8NFZ6 395 aa20.19■□□□□ 0.82
CIITA-215ENST00000637439 BRF1Q92994 677 aa20.19■□□□□ 0.82
CIITA-215ENST00000637439 TCF25Q9BQ70 676 aa20.19■□□□□ 0.82
CIITA-215ENST00000637439 ADAMTS10Q9H324 1103 aa20.19■□□□□ 0.82
CIITA-215ENST00000637439 DISC1Q9NRI5 854 aa20.19■□□□□ 0.82
CIITA-215ENST00000637439 WDR81Q562E7 1941 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 OATP04181 439 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 HOXB8P17481 243 aaPredicted RBP20.18■□□□□ 0.82
CIITA-215ENST00000637439 SFNP31947 248 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 TECP42680 631 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 USP11P51784 963 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 RBM10P98175 930 aaKnown RBP20.18■□□□□ 0.82
CIITA-215ENST00000637439 KCNC3Q14003 757 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 ANKRD54Q6NXT1 300 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 BLOC1S2Q6QNY1 142 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 ECHDC2Q86YB7 292 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 FBXL16Q8N461 479 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 KCNB2Q92953 911 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 LENG9Q96B70 501 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 RIT2Q99578 217 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 RNF26Q9BY78 433 aaPredicted RBP20.18■□□□□ 0.82
CIITA-215ENST00000637439 SPG21Q9NZD8 308 aa20.18■□□□□ 0.82
CIITA-215ENST00000637439 ADAMTS3O15072 1205 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 EOMESO95936 686 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 JAK3P52333 1124 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 CDC42EP1Q00587 391 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 PRKCEQ02156 737 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 SIGLEC14Q08ET2 396 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 LRRC55Q6ZSA7 311 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 LRRC71Q8N4P6 559 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 PHKBQ93100 1093 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 CCDC136Q96JN2 1154 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 JAKMIP1Q96N16 626 aaKnown RBP20.17■□□□□ 0.82
CIITA-215ENST00000637439 SCLT1Q96NL6 688 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 S1PR5Q9H228 398 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 RNF19AQ9NV58 838 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 DACT1Q9NYF0 836 aa20.17■□□□□ 0.82
CIITA-215ENST00000637439 A0A0U1RQF3 1178 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 MSH4O15457 936 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 ZNF862O60290 1169 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 GAS7O60861 476 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 DARSP14868 501 aaKnown RBP20.16■□□□□ 0.82
CIITA-215ENST00000637439 CPA1P15085 419 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 GPC3P51654 580 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 PTPN5P54829 565 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 TBC1D8BQ0IIM8 1120 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 BMS1Q14692 1282 aaKnown RBP20.16■□□□□ 0.82
CIITA-215ENST00000637439 TMC7Q7Z402 723 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 FBXL6Q8N531 539 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 RNF169Q8NCN4 708 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 RSPH1Q8WYR4 309 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 TEKT3Q9BXF9 490 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 MRPL9Q9BYD2 267 aaKnown RBP20.16■□□□□ 0.82
CIITA-215ENST00000637439 C22orf23Q9BZE7 217 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 SH3GLB2Q9NR46 395 aa20.16■□□□□ 0.82
CIITA-215ENST00000637439 IFNAR1P17181 557 aa20.15■□□□□ 0.82
CIITA-215ENST00000637439 SMC1AQ14683 1233 aaKnown RBP20.15■□□□□ 0.82
CIITA-215ENST00000637439 TPRNQ4KMQ1 711 aa20.15■□□□□ 0.82
CIITA-215ENST00000637439 RDM1Q8NG50 284 aa20.15■□□□□ 0.82
CIITA-215ENST00000637439 NLRP7Q8WX94 980 aa20.15■□□□□ 0.82
CIITA-215ENST00000637439 CASP10Q92851 521 aa20.15■□□□□ 0.82
CIITA-215ENST00000637439 SLC5A5Q92911 643 aa20.15■□□□□ 0.82
CIITA-215ENST00000637439 AGXT2Q9BYV1 514 aa20.15■□□□□ 0.82
CIITA-215ENST00000637439 CARNS1A5YM72 827 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 HIDE1A8MVS5 230 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 RPS6KB1P23443 525 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 HSPA4P34932 840 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 NTRK3Q16288 839 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 PTPN21Q16825 1174 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 CLLU1OSQ5K130 101 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 LRCH2Q5VUJ6 765 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 LLGL2Q6P1M3 1020 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 SYCE2Q6PIF2 218 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 SLC26A6Q9BXS9 759 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 GCOM2Q9BZD3 368 aaPredicted RBP20.14■□□□□ 0.81
CIITA-215ENST00000637439 CHST12Q9NRB3 414 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 NR2E1Q9Y466 385 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 SNX14Q9Y5W7 946 aa20.14■□□□□ 0.81
CIITA-215ENST00000637439 CHMP2AO43633 222 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 PSMA5P28066 241 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 ALDH7A1P49419 539 aaKnown RBP20.13■□□□□ 0.81
CIITA-215ENST00000637439 DNM2P50570 870 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 NLRP5P59047 1200 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 UGCGQ16739 394 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 CES5AQ6NT32 575 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 ZNF598Q86UK7 904 aaKnown RBP20.13■□□□□ 0.81
CIITA-215ENST00000637439 SKAP1Q86WV1 359 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 SLC39A11Q8N1S5 342 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 MRPL43Q8N983 215 aaKnown RBP20.13■□□□□ 0.81
CIITA-215ENST00000637439 PRSS33Q8NF86 280 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 HELQQ8TDG4 1101 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 NECTIN4Q96NY8 510 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 UNC45AQ9H3U1 944 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 VPS54Q9P1Q0 977 aa20.13■□□□□ 0.81
CIITA-215ENST00000637439 SKIP12755 728 aa20.12■□□□□ 0.81
CIITA-215ENST00000637439 PBX3P40426 434 aa20.12■□□□□ 0.81
CIITA-215ENST00000637439 ITIH3Q06033 890 aa20.12■□□□□ 0.81
CIITA-215ENST00000637439 TARBP2Q15633 366 aaKnown RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms