RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ALDH7A1P49419 539 aaKnown RBP16.63■□□□□ 0.25
CLN3-249ENST00000636685 MFAP1P55081 439 aaKnown RBP16.63■□□□□ 0.25
CLN3-249ENST00000636685 ACTR2P61160 394 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 PHLDB3Q6NSJ2 640 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 SLC44A3Q8N4M1 653 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 HELQQ8TDG4 1101 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 GPR152Q8TDT2 470 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 FOXQ1Q9C009 403 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 SENP2Q9HC62 589 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 JADE2Q9NQC1 790 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 IRAK3Q9Y616 596 aa16.63■□□□□ 0.25
CLN3-249ENST00000636685 PATJQ8NI35 1801 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 PRR5-ARHGAP8B1AHC4 643 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 VTNP04004 478 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 SRFP11831 508 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 GBP2P32456 591 aaPredicted RBP16.62■□□□□ 0.25
CLN3-249ENST00000636685 ARHGAP8P85298 464 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 TICAM2Q86XR7 235 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 GPR161Q8N6U8 529 aaKnown RBP16.62■□□□□ 0.25
CLN3-249ENST00000636685 RTKNQ9BST9 563 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 CNNM2Q9H8M5 875 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 ARHGEF3Q9NR81 526 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 PCDHB15Q9Y5E8 787 aa16.62■□□□□ 0.25
CLN3-249ENST00000636685 GPR32O75388 356 aa16.61■□□□□ 0.25
CLN3-249ENST00000636685 LMNB2Q03252 620 aa16.61■□□□□ 0.25
CLN3-249ENST00000636685 GIT2Q14161 759 aa16.61■□□□□ 0.25
CLN3-249ENST00000636685 NONOQ15233 471 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLN3-249ENST00000636685 IMMTQ16891 758 aaKnown RBP16.61■□□□□ 0.25
CLN3-249ENST00000636685 PPFIBP1Q86W92 1011 aa16.61■□□□□ 0.25
CLN3-249ENST00000636685 BCL7CQ8WUZ0 217 aaPredicted RBP16.61■□□□□ 0.25
CLN3-249ENST00000636685 RILPL2Q969X0 211 aa16.61■□□□□ 0.25
CLN3-249ENST00000636685 MYH9P35579 1960 aaKnown RBP16.6■□□□□ 0.25
CLN3-249ENST00000636685 ZBTB42B2RXF5 422 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 SPTLC1O15269 473 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 HBP1O60381 514 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 ZC3H11AO75152 810 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLN3-249ENST00000636685 ZSCAN20P17040 1043 aaPredicted RBP16.6■□□□□ 0.25
CLN3-249ENST00000636685 SDSP20132 328 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 POLGP54098 1239 aaPredicted RBP16.6■□□□□ 0.25
CLN3-249ENST00000636685 PTPN14Q15678 1187 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 UBE2SQ16763 222 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 ANKRD45Q5TZF3 282 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 DDX53Q86TM3 631 aaKnown RBP16.6■□□□□ 0.25
CLN3-249ENST00000636685 PJA1Q8NG27 643 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 MYADMQ96S97 322 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 USP18Q9UMW8 372 aa16.6■□□□□ 0.25
CLN3-249ENST00000636685 COL4A3Q01955 1670 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 MAFGO15525 162 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 TGM1P22735 817 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 KLRC2P26717 231 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 CLCN4P51793 760 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 TROAPQ12815 778 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 WTAPQ15007 396 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 DCLRE1AQ6PJP8 1040 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 C15orf39Q6ZRI6 1047 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 ZNF598Q86UK7 904 aaKnown RBP16.59■□□□□ 0.25
CLN3-249ENST00000636685 ST13P5Q8NFI4 369 aaPredicted RBP16.59■□□□□ 0.25
CLN3-249ENST00000636685 IGSF21Q96ID5 467 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 KLHL5Q96PQ7 755 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 SDF4Q9BRK5 362 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 VN1R3Q9BXE9 311 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 MRPL9Q9BYD2 267 aaKnown RBP16.59■□□□□ 0.25
CLN3-249ENST00000636685 KCNH7Q9NS40 1196 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 EPS15L1Q9UBC2 864 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 RCAN3Q9UKA8 241 aa16.59■□□□□ 0.25
CLN3-249ENST00000636685 SMG5Q9UPR3 1016 aaKnown RBP16.59■□□□□ 0.25
CLN3-249ENST00000636685 CNOT1A5YKK6 2376 aaKnown RBP16.59■□□□□ 0.25
CLN3-249ENST00000636685 ATG7O95352 703 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 C22orf31O95567 290 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 SLC26A2P50443 739 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 CSTF1Q05048 431 aaKnown RBP16.58■□□□□ 0.24
CLN3-249ENST00000636685 ITGB3BPQ13352 177 aaPredicted RBP16.58■□□□□ 0.24
CLN3-249ENST00000636685 ZNF528Q3MIS6 628 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 PPM1JQ5JR12 505 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 ZNF484Q5JVG2 852 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 CWC27Q6UX04 472 aaKnown RBP16.58■□□□□ 0.24
CLN3-249ENST00000636685 METTL13Q8N6R0 699 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 SECISBP2LQ93073 1101 aaKnown RBP16.58■□□□□ 0.24
CLN3-249ENST00000636685 PSTPIP2Q9H939 334 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 PARD6AQ9NPB6 346 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 SPATA6Q9NWH7 488 aaPredicted RBP16.58■□□□□ 0.24
CLN3-249ENST00000636685 ZBTB47Q9UFB7 747 aaPredicted RBP16.58■□□□□ 0.24
CLN3-249ENST00000636685 NFASCO94856 1347 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 COL1A2P08123 1366 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 MYH15Q9Y2K3 1946 aa16.58■□□□□ 0.24
CLN3-249ENST00000636685 FASNP49327 2511 aaKnown RBP16.57■□□□□ 0.24
CLN3-249ENST00000636685 DOCK6Q96HP0 2047 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 CLUHO75153 1309 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 IGKV6D-21A0A0A0MT36 114 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 BACH1O14867 736 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 IFIT3O14879 490 aaKnown RBP16.57■□□□□ 0.24
CLN3-249ENST00000636685 SSBP05455 408 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLN3-249ENST00000636685 CNPP09543 421 aaKnown RBP16.57■□□□□ 0.24
CLN3-249ENST00000636685 MYBP10242 640 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 COL9A3Q14050 684 aaPredicted RBP16.57■□□□□ 0.24
CLN3-249ENST00000636685 ATRIPQ8WXE1 791 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 RRP36Q96EU6 259 aaKnown RBP16.57■□□□□ 0.24
CLN3-249ENST00000636685 ZNF668Q96K58 619 aaPredicted RBP16.57■□□□□ 0.24
CLN3-249ENST00000636685 MXRA8Q9BRK3 442 aa16.57■□□□□ 0.24
CLN3-249ENST00000636685 DSCC1Q9BVC3 393 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms