RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 MTERF2Q49AM1 385 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 FOXD4L3Q6VB84 417 aaPredicted RBP20.24■□□□□ 0.83
CLN3-243ENST00000635973 TMEM192Q8IY95 271 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 ZBTB10Q96DT7 871 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 CCDC43Q96MW1 224 aaKnown RBP20.24■□□□□ 0.83
CLN3-243ENST00000635973 CLIC4Q9Y696 253 aa20.24■□□□□ 0.83
CLN3-243ENST00000635973 WDR81Q562E7 1941 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 ENPP3O14638 875 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 GPM6BQ13491 265 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 ARL6IP4Q66PJ3 421 aaKnown RBP20.23■□□□□ 0.83
CLN3-243ENST00000635973 MTHFD1LQ6UB35 978 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 NME8Q8N427 588 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 FTHL17Q9BXU8 183 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 STK24Q9Y6E0 443 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 SQORQ9Y6N5 450 aa20.23■□□□□ 0.83
CLN3-243ENST00000635973 EVPLQ92817 2033 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 SMIM35A0A1B0GVV1 85 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 TMEM150BA6NC51 233 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 KLRC1P26715 233 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 CD52P31358 61 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 YWHABP31946 246 aaKnown RBP20.22■□□□□ 0.83
CLN3-243ENST00000635973 CCT6AP40227 531 aaKnown RBP20.22■□□□□ 0.83
CLN3-243ENST00000635973 TBC1D8BQ0IIM8 1120 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 PAK2Q13177 524 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 PDIA5Q14554 519 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 PLA2G4FQ68DD2 849 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 OTUD6AQ7L8S5 288 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 C4orf19Q8IY42 314 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 METTL13Q8N6R0 699 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 SNX29Q8TEQ0 813 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 MRPL38Q96DV4 380 aaKnown RBP20.22■□□□□ 0.83
CLN3-243ENST00000635973 NECAB3Q96P71 396 aaPredicted RBP20.22■□□□□ 0.83
CLN3-243ENST00000635973 USP28Q96RU2 1077 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 HSD17B14Q9BPX1 270 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 CELF4Q9BZC1 486 aaKnown RBP20.22■□□□□ 0.83
CLN3-243ENST00000635973 TUFT1Q9NNX1 390 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 WRAP73Q9P2S5 460 aaPredicted RBP20.22■□□□□ 0.83
CLN3-243ENST00000635973 RWDD3Q9Y3V2 267 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 XIRP2A4UGR9 3374 aa20.22■□□□□ 0.83
CLN3-243ENST00000635973 H3BNC9 293 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 SLITRK3O94933 977 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 COL9A1P20849 921 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 CTNNB1P35222 781 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 BTG3Q14201 252 aaPredicted RBP20.21■□□□□ 0.83
CLN3-243ENST00000635973 IL17AQ16552 155 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 KRT79Q5XKE5 535 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 IGSF22Q8N9C0 903 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 SH2D3AQ9BRG2 576 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 POLR3CQ9BUI4 534 aaPredicted RBP20.21■□□□□ 0.83
CLN3-243ENST00000635973 GINS2Q9Y248 185 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 COL4A6Q14031 1691 aa20.21■□□□□ 0.83
CLN3-243ENST00000635973 TTC3P53804 2025 aa20.2■□□□□ 0.83
CLN3-243ENST00000635973 ZBTB42B2RXF5 422 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 MAGEB2O15479 319 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 MED24O75448 989 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 C22orf31O95567 290 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 BRD1O95696 1058 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 MARCKSP29966 332 aaPredicted RBP20.2■□□□□ 0.82
CLN3-243ENST00000635973 STK38Q15208 465 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 TIGD5Q53EQ6 642 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 XKR9Q5GH70 373 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 ANO5Q75V66 913 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 CATSPER3Q86XQ3 398 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 CEP170P1Q96L14 293 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 NIFKQ9BYG3 293 aaKnown RBP20.2■□□□□ 0.82
CLN3-243ENST00000635973 AGO3Q9H9G7 860 aaKnown RBP20.2■□□□□ 0.82
CLN3-243ENST00000635973 ADGRA3Q8IWK6 1321 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 BDP1A6H8Y1 2624 aa20.2■□□□□ 0.82
CLN3-243ENST00000635973 MYH15Q9Y2K3 1946 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 PP2D1A8MPX8 630 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 STBD1O95210 358 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 STAG3L1P0CL83 205 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 RPA1P27694 616 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 TMOD1P28289 359 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 NFX1Q12986 1120 aaKnown RBP20.19■□□□□ 0.82
CLN3-243ENST00000635973 PTPAQ15257 358 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 ZRSR1Q15695 479 aaKnown RBP20.19■□□□□ 0.82
CLN3-243ENST00000635973 ODR4Q5SWX8 454 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 POTEGQ6S5H5 508 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 UBE2ZQ9H832 354 aaPredicted RBP20.19■□□□□ 0.82
CLN3-243ENST00000635973 CYP26B1Q9NR63 512 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 TFIP11Q9UBB9 837 aaKnown RBP20.19■□□□□ 0.82
CLN3-243ENST00000635973 LRFN2Q9ULH4 789 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 PADI3Q9ULW8 664 aa20.19■□□□□ 0.82
CLN3-243ENST00000635973 LYPLA2O95372 231 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 RB1P06400 928 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 SPATA31C1P0DKV0 1188 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 POLGP54098 1239 aaPredicted RBP20.18■□□□□ 0.82
CLN3-243ENST00000635973 NPEPPSP55786 919 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 EP400NLQ6ZTU2 488 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 LRRC71Q8N4P6 559 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 PIGOQ8TEQ8 1089 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 CDK5RAP3Q96JB5 506 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 AK8Q96MA6 479 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 MAP7D2Q96T17 732 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 JPH2Q9BR39 696 aaPredicted RBP20.18■□□□□ 0.82
CLN3-243ENST00000635973 C11orf84Q9BUA3 381 aaPredicted RBP20.18■□□□□ 0.82
CLN3-243ENST00000635973 PPME1Q9Y570 386 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 ATP6V1DQ9Y5K8 247 aa20.18■□□□□ 0.82
CLN3-243ENST00000635973 NCLP19338 710 aaKnown RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms