RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TRIP11Q15643 1979 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 A0A087WZ62 844 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 IBSPP21815 317 aaPredicted RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 CACNB1Q02641 598 aaPredicted RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 ARL6IP4Q66PJ3 421 aaKnown RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 SYMPKQ92797 1274 aaKnown RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 FDXACB1Q9BRP7 624 aaPredicted RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 TRPV2Q9Y5S1 764 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 COL4A6Q14031 1691 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 NPHP3-ACAD11A0A0J9YXS1 232 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 WDR5P61964 334 aaKnown RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 FAM228AQ86W67 206 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 PRPF31Q8WWY3 499 aaKnown RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 HERVK_113Q902F9 699 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 NLRP4Q96MN2 994 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 IFT122Q9HBG6 1241 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 SUCLA2Q9P2R7 463 aaPredicted RBP15.04■□□□□ -0
LINC00540-202ENST00000616974 PADI3Q9ULW8 664 aa15.04■□□□□ -0
LINC00540-202ENST00000616974 PSRC1Q6PGN9 363 aaPredicted RBP15.03■□□□□ -0
LINC00540-202ENST00000616974 Q7L0L9 218 aa15.03■□□□□ -0
LINC00540-202ENST00000616974 CABP7Q86V35 215 aa15.03■□□□□ -0
LINC00540-202ENST00000616974 BLOC1S4Q9NUP1 217 aa15.03■□□□□ -0
LINC00540-202ENST00000616974 MAGEB2O15479 319 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 SRGAP2CP0DJJ0 459 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 PLCG1P19174 1290 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 NFX1Q12986 1120 aaKnown RBP15.02■□□□□ -0
LINC00540-202ENST00000616974 DHX8Q14562 1220 aaKnown RBP15.02■□□□□ -0
LINC00540-202ENST00000616974 STK38Q15208 465 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 KRT79Q5XKE5 535 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 ERMNQ8TAM6 284 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 NEK9Q8TD19 979 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 SLC7A3Q8WY07 619 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 KIFC3Q9BVG8 833 aa15.02■□□□□ -0
LINC00540-202ENST00000616974 SRPRBQ9Y5M8 271 aaKnown RBP15.02■□□□□ -0
LINC00540-202ENST00000616974 FNDC1Q4ZHG4 1894 aaPredicted RBP15.02■□□□□ -0
LINC00540-202ENST00000616974 LCHNA4D1U4 455 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 TTLL13PA6NNM8 815 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 EDN1P05305 212 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 LAMTOR4Q0VGL1 99 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 TMEM119Q4V9L6 283 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 NAALADL2Q58DX5 795 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 AXDND1Q5T1B0 1012 aaPredicted RBP15.02□□□□□ -0.01
LINC00540-202ENST00000616974 IER5Q5VY09 327 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 HAUS3Q68CZ6 603 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 PADI6Q6TGC4 694 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 RSPH3Q86UC2 560 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 RPUSD2Q8IZ73 545 aaKnown RBP15.02□□□□□ -0.01
LINC00540-202ENST00000616974 DAW1Q8N136 415 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 NLRP7Q8WX94 980 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 NACC1Q96RE7 527 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 MTRQ99707 1265 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 ANKEF1Q9NU02 776 aa15.02□□□□□ -0.01
LINC00540-202ENST00000616974 YBX2Q9Y2T7 364 aaKnown RBP15.02□□□□□ -0.01
LINC00540-202ENST00000616974 SFI1A8K8P3 1242 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 SPTLC2O15270 562 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 GLRA2P23416 452 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 CAPSQ13938 189 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 CNKSR3Q6P9H4 555 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 SHC4Q6S5L8 630 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 TSHZ1Q6ZSZ6 1077 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 OTUD6AQ7L8S5 288 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 PDILTQ8N807 584 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 TNPO1Q92973 898 aaKnown RBP15.01□□□□□ -0.01
LINC00540-202ENST00000616974 FAM161BQ96MY7 647 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 MAP7D2Q96T17 732 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 PBX4Q9BYU1 374 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 PCDHA7Q9UN72 937 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 ST3GAL5Q9UNP4 418 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 COL4A3BPQ9Y5P4 624 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 ADGRA3Q8IWK6 1321 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 KDM3AQ9Y4C1 1321 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 KIAA1671Q9BY89 1806 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 NLRC5Q86WI3 1866 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 CAND2O75155 1236 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 UPP2O95045 317 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 SSBP05455 408 aaKnown RBP eCLIP15.01□□□□□ -0.01
LINC00540-202ENST00000616974 RFC2P35250 354 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 ARSHQ5FYA8 562 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 HYIQ5T013 277 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 MYOCDQ8IZQ8 938 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 POLR3FQ9H1D9 316 aaPredicted RBP15.01□□□□□ -0.01
LINC00540-202ENST00000616974 ATP6V0A4Q9HBG4 840 aa15.01□□□□□ -0.01
LINC00540-202ENST00000616974 DBR1Q9UK59 544 aaKnown RBP15.01□□□□□ -0.01
LINC00540-202ENST00000616974 RBM19Q9Y4C8 960 aaKnown RBP15.01□□□□□ -0.01
LINC00540-202ENST00000616974 NCLP19338 710 aaKnown RBP15□□□□□ -0.01
LINC00540-202ENST00000616974 ARL2P36404 184 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 GATMP50440 423 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 MCM6Q14566 821 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 LRIT3Q3SXY7 679 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 FAM102BQ5T8I3 360 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 CDR2LQ86X02 465 aaPredicted RBP15□□□□□ -0.01
LINC00540-202ENST00000616974 NME8Q8N427 588 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 RNF149Q8NC42 400 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 SCLT1Q96NL6 688 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 RAB34Q9BZG1 259 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 ERVK-5Q9HDB9 667 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 SLC4A7Q9Y6M7 1214 aa15□□□□□ -0.01
LINC00540-202ENST00000616974 ARHGEF35A5YM69 484 aa14.99□□□□□ -0.01
LINC00540-202ENST00000616974 DKC1O60832 514 aaKnown RBP eCLIP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms