RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SMRP1Q8NCR6 262 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 LARP6Q9BRS8 491 aaKnown RBP21.37■■□□□ 1.01
CDX1-202ENST00000616154 ADAMTS10Q9H324 1103 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 CWH43Q9H720 699 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 TLR9Q9NR96 1032 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 NRBP2Q9NSY0 501 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 HCSTQ9UBK5 93 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 STK36Q9NRP7 1315 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 PIEZO1Q92508 2521 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 TRIOO75962 3097 aa21.37■■□□□ 1.01
CDX1-202ENST00000616154 M0R2N6 131 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 GAS7O60861 476 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 LAG3P18627 525 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 SFNP31947 248 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 JAK3P52333 1124 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 GALNT17Q6IS24 598 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 RBM23Q86U06 439 aaKnown RBP21.36■■□□□ 1.01
CDX1-202ENST00000616154 LRRC71Q8N4P6 559 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 TMEM117Q9H0C3 514 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 TLE6Q9H808 572 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 ZNF318Q5VUA4 2279 aa21.36■■□□□ 1.01
CDX1-202ENST00000616154 FSD2A1L4K1 749 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 HOXA2O43364 376 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 CDKL5O76039 1030 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 EIF4BP23588 611 aaKnown RBP21.35■■□□□ 1.01
CDX1-202ENST00000616154 AK2P54819 239 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 NLRP5P59047 1200 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 UGCGQ16739 394 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 HERC4Q5GLZ8 1057 aaPredicted RBP21.35■■□□□ 1.01
CDX1-202ENST00000616154 LRCH2Q5VUJ6 765 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 PDE12Q6L8Q7 609 aaKnown RBP21.35■■□□□ 1.01
CDX1-202ENST00000616154 THNSL1Q8IYQ7 743 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 MICAL1Q8TDZ2 1067 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 TEKT3Q9BXF9 490 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 C22orf23Q9BZE7 217 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 RNF19AQ9NV58 838 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 BARX2Q9UMQ3 279 aaPredicted RBP21.35■■□□□ 1.01
CDX1-202ENST00000616154 PCDHA4Q9UN74 947 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 LZTS1Q9Y250 596 aa21.35■■□□□ 1.01
CDX1-202ENST00000616154 FSCN2O14926 492 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 CHMP2AO43633 222 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 GPC3P51654 580 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 ERVFC1P60507 584 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 STK3Q13188 491 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 Q4G0T1 1027 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 RNF135Q8IUD6 432 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 RDM1Q8NG50 284 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 TBCKQ8TEA7 893 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 CDCA3Q99618 268 aaPredicted RBP21.34■■□□□ 1.01
CDX1-202ENST00000616154 SLKQ9H2G2 1235 aaPredicted RBP21.34■■□□□ 1.01
CDX1-202ENST00000616154 UNC45AQ9H3U1 944 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 MUTYHQ9UIF7 546 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 TECTAO75443 2155 aa21.34■■□□□ 1.01
CDX1-202ENST00000616154 PSMD10O75832 226 aa21.33■■□□□ 1.01
CDX1-202ENST00000616154 ZSCAN20P17040 1043 aaPredicted RBP21.33■■□□□ 1.01
CDX1-202ENST00000616154 PLCB3Q01970 1234 aa21.33■■□□□ 1.01
CDX1-202ENST00000616154 TARBP2Q15633 366 aaKnown RBP21.33■■□□□ 1.01
CDX1-202ENST00000616154 DUSP6Q16828 381 aa21.33■■□□□ 1.01
CDX1-202ENST00000616154 LRRC43Q8N309 656 aa21.33■■□□□ 1.01
CDX1-202ENST00000616154 CASD1Q96PB1 797 aa21.33■■□□□ 1.01
CDX1-202ENST00000616154 USP15Q9Y4E8 981 aaPredicted RBP21.33■■□□□ 1.01
CDX1-202ENST00000616154 CYP3A7-CYP3A51PA0A087WV96 503 aa21.32■■□□□ 1
CDX1-202ENST00000616154 PER2O15055 1255 aa21.32■■□□□ 1
CDX1-202ENST00000616154 DARSP14868 501 aaKnown RBP21.32■■□□□ 1
CDX1-202ENST00000616154 CYP3A7P24462 503 aa21.32■■□□□ 1
CDX1-202ENST00000616154 TBC1D8BQ0IIM8 1120 aa21.32■■□□□ 1
CDX1-202ENST00000616154 LRRC55Q6ZSA7 311 aa21.32■■□□□ 1
CDX1-202ENST00000616154 ECHDC2Q86YB7 292 aa21.32■■□□□ 1
CDX1-202ENST00000616154 VN1R2Q8NFZ6 395 aa21.32■■□□□ 1
CDX1-202ENST00000616154 MRPS27Q92552 414 aaKnown RBP21.32■■□□□ 1
CDX1-202ENST00000616154 GJA10Q969M2 543 aa21.32■■□□□ 1
CDX1-202ENST00000616154 LOC730098B7Z3J9 87 aa21.31■■□□□ 1
CDX1-202ENST00000616154 CTDNEP1O95476 244 aa21.31■■□□□ 1
CDX1-202ENST00000616154 B3GNT9Q6UX72 402 aa21.31■■□□□ 1
CDX1-202ENST00000616154 MIER3Q7Z3K6 550 aa21.31■■□□□ 1
CDX1-202ENST00000616154 ABI1Q8IZP0 508 aa21.31■■□□□ 1
CDX1-202ENST00000616154 ZNF668Q96K58 619 aaPredicted RBP21.31■■□□□ 1
CDX1-202ENST00000616154 MBOAT7Q96N66 472 aa21.31■■□□□ 1
CDX1-202ENST00000616154 AIFM3Q96NN9 605 aa21.31■■□□□ 1
CDX1-202ENST00000616154 NIFKQ9BYG3 293 aaKnown RBP21.31■■□□□ 1
CDX1-202ENST00000616154 TDP2O95551 362 aa21.3■■□□□ 1
CDX1-202ENST00000616154 PPM1AP35813 382 aa21.3■■□□□ 1
CDX1-202ENST00000616154 CBX2Q14781 532 aaPredicted RBP21.3■■□□□ 1
CDX1-202ENST00000616154 ME3Q16798 604 aa21.3■■□□□ 1
CDX1-202ENST00000616154 XKR3Q5GH77 459 aa21.3■■□□□ 1
CDX1-202ENST00000616154 KCNT2Q6UVM3 1135 aa21.3■■□□□ 1
CDX1-202ENST00000616154 MOXD1Q6UVY6 613 aa21.3■■□□□ 1
CDX1-202ENST00000616154 BLIDQ8IZY5 108 aa21.3■■□□□ 1
CDX1-202ENST00000616154 GTF3C6Q969F1 213 aa21.3■■□□□ 1
CDX1-202ENST00000616154 ZNF558Q96NG5 402 aa21.3■■□□□ 1
CDX1-202ENST00000616154 SCLT1Q96NL6 688 aa21.3■■□□□ 1
CDX1-202ENST00000616154 PHF20Q9BVI0 1012 aa21.3■■□□□ 1
CDX1-202ENST00000616154 SEPT9Q9UHD8 586 aaPredicted RBP21.3■■□□□ 1
CDX1-202ENST00000616154 PUF60Q9UHX1 559 aaKnown RBP21.3■■□□□ 1
CDX1-202ENST00000616154 A0A0U1RQF3 1178 aa21.29■■□□□ 1
CDX1-202ENST00000616154 STBD1O95210 358 aa21.29■■□□□ 1
CDX1-202ENST00000616154 SRGAP2BP0DMP2 458 aa21.29■■□□□ 1
CDX1-202ENST00000616154 ATF7P17544 494 aaPredicted RBP21.29■■□□□ 1
CDX1-202ENST00000616154 RBM10P98175 930 aaKnown RBP21.29■■□□□ 1
CDX1-202ENST00000616154 CDC42EP1Q00587 391 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms