RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 BMPR1AP36894 532 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 CYP4A11Q02928 519 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 CAMK1Q14012 370 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 TRIM29Q14134 588 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 CALCRLQ16602 461 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 CMTR2Q8IYT2 770 aaKnown RBP13.62□□□□□ -0.23
LIG1-217ENST00000599165 FIBCD1Q8N539 461 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 TMX3Q96JJ7 454 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 SAMD11Q96NU1 681 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 EIF2AK1Q9BQI3 630 aaKnown RBP13.62□□□□□ -0.23
LIG1-217ENST00000599165 FOXP1Q9H334 677 aaPredicted RBP13.62□□□□□ -0.23
LIG1-217ENST00000599165 TTC12Q9H892 705 aaPredicted RBP13.62□□□□□ -0.23
LIG1-217ENST00000599165 XPNPEP1Q9NQW7 623 aa13.62□□□□□ -0.23
LIG1-217ENST00000599165 A0A087WZ62 844 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 POTEMA6NI47 508 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 GRM6O15303 877 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 LYPLA2O95372 231 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 SPATA31C1P0DKV0 1188 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 ATF7P17544 494 aaPredicted RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 TMOD1P28289 359 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 YWHABP31946 246 aaKnown RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 TXKP42681 527 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 TOB1P50616 345 aaPredicted RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 HMGN5P82970 282 aaKnown RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 GPM6BQ13491 265 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 BTG3Q14201 252 aaPredicted RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 NBR1Q14596 966 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 PAN2Q504Q3 1202 aaKnown RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 FAM102BQ5T8I3 360 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 SLC24A5Q71RS6 500 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 C4orf32Q8N8J7 132 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 ATXN2LQ8WWM7 1075 aaKnown RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 MRPL38Q96DV4 380 aaKnown RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 ASB2Q96Q27 587 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 FDXACB1Q9BRP7 624 aaPredicted RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 IFT122Q9HBG6 1241 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 C1orf112Q9NSG2 853 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 SUCLA2Q9P2R7 463 aaPredicted RBP13.61□□□□□ -0.23
LIG1-217ENST00000599165 PCDHA12Q9UN75 941 aa13.61□□□□□ -0.23
LIG1-217ENST00000599165 A0A087WWV3 80 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 FGFR1P11362 822 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 ATP2B1P20020 1258 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 DNAJB1P25685 340 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 U2AF2P26368 475 aaKnown RBP eCLIP13.6□□□□□ -0.23
LIG1-217ENST00000599165 MCM7P33993 719 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 CTNNB1P35222 781 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 ZNF174Q15697 407 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 TJAP1Q5JTD0 557 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 FAM43BQ6ZT52 329 aaPredicted RBP13.6□□□□□ -0.23
LIG1-217ENST00000599165 ZNF598Q86UK7 904 aaKnown RBP13.6□□□□□ -0.23
LIG1-217ENST00000599165 NOSTRINQ8IVI9 506 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 TMEM143Q96AN5 459 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 CEP170P1Q96L14 293 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 ZSWIM4Q9H7M6 989 aa13.6□□□□□ -0.23
LIG1-217ENST00000599165 BMP2KQ9NSY1 1161 aaPredicted RBP13.6□□□□□ -0.23
LIG1-217ENST00000599165 DENND3A2RUS2 1198 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 BAG4O95429 457 aaKnown RBP13.59□□□□□ -0.23
LIG1-217ENST00000599165 STAG3L1P0CL83 205 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 BMP1P13497 986 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 IBSPP21815 317 aaPredicted RBP13.59□□□□□ -0.23
LIG1-217ENST00000599165 KCNQ1P51787 676 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 COL19A1Q14993 1142 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 LRRC55Q6ZSA7 311 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 RHPN2Q8IUC4 686 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 TPH2Q8IWU9 490 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 ZNF710Q8N1W2 664 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 NLRP7Q8WX94 980 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 ELAC1Q9H777 363 aaKnown RBP13.59□□□□□ -0.23
LIG1-217ENST00000599165 MINDY3Q9H8M7 445 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 TMEM161AQ9NX61 479 aa13.59□□□□□ -0.23
LIG1-217ENST00000599165 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.58□□□□□ -0.24
LIG1-217ENST00000599165 MARCH6O60337 910 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 DKC1O60832 514 aaKnown RBP eCLIP13.58□□□□□ -0.241e-6■■□□□ 12.5
LIG1-217ENST00000599165 MED24O75448 989 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 ITGB1P05556 798 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 RB1P06400 928 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 RFC5P40937 340 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 RARRES1P49788 294 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 MRPS5P82675 430 aaKnown RBP13.58□□□□□ -0.24
LIG1-217ENST00000599165 EMC2Q15006 297 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 SAFBQ15424 915 aaKnown RBP eCLIP13.58□□□□□ -0.24
LIG1-217ENST00000599165 CLLU1OSQ5K130 101 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 TTC38Q5R3I4 469 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 ODR4Q5SWX8 454 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 ZNF410Q86VK4 478 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 CATSPER3Q86XQ3 398 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 ECHDC2Q86YB7 292 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 FAM184AQ8NB25 1140 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 PRPF31Q8WWY3 499 aaKnown RBP13.58□□□□□ -0.24
LIG1-217ENST00000599165 NLRP4Q96MN2 994 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 CASD1Q96PB1 797 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 GCOM2Q9BZD3 368 aaPredicted RBP13.58□□□□□ -0.24
LIG1-217ENST00000599165 CWH43Q9H720 699 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 ALG13Q9NP73 1137 aaKnown RBP13.58□□□□□ -0.24
LIG1-217ENST00000599165 PLAGL2Q9UPG8 496 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 PPME1Q9Y570 386 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 PCDHB7Q9Y5E2 793 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 COL4A3BPQ9Y5P4 624 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 BDP1A6H8Y1 2624 aa13.58□□□□□ -0.24
LIG1-217ENST00000599165 A0A0U1RQF3 1178 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms