RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 AOPEPQ8N6M6 819 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 PCSK9Q8NBP7 692 aaKnown RBP17.07■□□□□ 0.32
UPF1-206ENST00000598471 KIAA0895Q8NCT3 520 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 HPS3Q969F9 1004 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 CEP89Q96ST8 783 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 POLR3FQ9H1D9 316 aaPredicted RBP17.07■□□□□ 0.32
UPF1-206ENST00000598471 XPNPEP1Q9NQW7 623 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 TBC1D7Q9P0N9 293 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 CTNND2Q9UQB3 1225 aa17.07■□□□□ 0.32
UPF1-206ENST00000598471 H0YCG3 227 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 EIF3DO15371 548 aaKnown RBP eCLIP17.06■□□□□ 0.32
UPF1-206ENST00000598471 ADAMTS4O75173 837 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 GCNT3O95395 438 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 ABCD1P33897 745 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 MRE11P49959 708 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 DNM2P50570 870 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 GRIK4Q16099 956 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 KIAA0753Q2KHM9 967 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 UVSSAQ2YD98 709 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 IER5Q5VY09 327 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 NELFBQ8WX92 580 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 GRPEL1Q9HAV7 217 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 GPRC5CQ9NQ84 441 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 RWDD2AQ9UIY3 292 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 MAPK8IP1Q9UQF2 711 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 PCDHB13Q9Y5F0 798 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 PCDHA2Q9Y5H9 948 aa17.06■□□□□ 0.32
UPF1-206ENST00000598471 NRCAMQ92823 1304 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 MYADML2A6NDP7 307 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 ZBTB42B2RXF5 422 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 K7ENM7 598 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 HAS3O00219 553 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 MYCP01106 439 aaPredicted RBP17.05■□□□□ 0.32
UPF1-206ENST00000598471 SCP2P22307 547 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 CHMP4BP1P59074 171 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 IGBP1P78318 339 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 PURAQ00577 322 aaKnown RBP17.05■□□□□ 0.32
UPF1-206ENST00000598471 IQCB1Q15051 598 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 TPD52L1Q16890 204 aaPredicted RBP17.05■□□□□ 0.32
UPF1-206ENST00000598471 LUZP1Q86V48 1076 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 ENOX1Q8TC92 643 aaKnown RBP17.05■□□□□ 0.32
UPF1-206ENST00000598471 SPIRE2Q8WWL2 714 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 PSPC1Q8WXF1 523 aaKnown RBP17.05■□□□□ 0.32
UPF1-206ENST00000598471 KAT2BQ92831 832 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 TSG101Q99816 390 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.05■□□□□ 0.32
UPF1-206ENST00000598471 POLD4Q9HCU8 107 aa17.05■□□□□ 0.32
UPF1-206ENST00000598471 IGKV6-21A0A0C4DH24 114 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 CCDC85CA6NKD9 419 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 CCDC169A6NNP5 214 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 CABYRO75952 493 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 C22orf31O95567 290 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 MYCNP04198 464 aaPredicted RBP17.04■□□□□ 0.32
UPF1-206ENST00000598471 SMIM10L2AP0DMW4 78 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 SMIM10L2BP0DMW5 78 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 GNAT1P11488 350 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 CCNE1P24864 410 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 TMOD1P28289 359 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 ARL2P36404 184 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 PEX3P56589 373 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 IRX5P78411 483 aaPredicted RBP17.04■□□□□ 0.32
UPF1-206ENST00000598471 MXD4Q14582 209 aaPredicted RBP17.04■□□□□ 0.32
UPF1-206ENST00000598471 LRRC41Q15345 812 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 DHX40Q8IX18 779 aaKnown RBP17.04■□□□□ 0.32
UPF1-206ENST00000598471 KLHDC9Q8NEP7 349 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 TRAPPC12Q8WVT3 735 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 P2RX5Q93086 422 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 TMEM143Q96AN5 459 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 HVCN1Q96D96 273 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 ST6GALNAC4Q9H4F1 302 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 SUGCTQ9HAC7 445 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 KMT5AQ9NQR1 393 aa17.04■□□□□ 0.32
UPF1-206ENST00000598471 MYBP10242 640 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 KLRC1P26715 233 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 NMT1P30419 496 aaKnown RBP17.03■□□□□ 0.32
UPF1-206ENST00000598471 NAMPTP43490 491 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 NCKAP1LP55160 1127 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 LRRC63Q05C16 580 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 MTFR1Q15390 333 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 BMT2Q1RMZ1 405 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 SPATA1Q5VX52 437 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 EFCAB12Q6NXP0 572 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 FOXR2Q6PJQ5 311 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 EPM2AIP1Q7L775 607 aaPredicted RBP17.03■□□□□ 0.32
UPF1-206ENST00000598471 ZNF720Q7Z2F6 126 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 METTL13Q8N6R0 699 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 C7orf31Q8N865 590 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 ARRDC4Q8NCT1 418 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 ZNF507Q8TCN5 953 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 ARMC5Q96C12 935 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 MAP7D2Q96T17 732 aa17.03■□□□□ 0.32
UPF1-206ENST00000598471 PHLPP2Q6ZVD8 1323 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 MOXD2PA6NHM9 499 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 ASAP2O43150 1006 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 ASGR1P07306 291 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 NPTX2P47972 431 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 SOX10P56693 466 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 STX17P56962 302 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 TFDP1Q14186 410 aa17.02■□□□□ 0.32
UPF1-206ENST00000598471 KCNA10Q16322 511 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms