RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PI15O43692 258 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CCNE2O96020 404 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CALM1P0DP23 149 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CALM2P0DP24 149 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CALM3P0DP25 149 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 EPCAMP16422 314 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 METAP2P50579 478 aaKnown RBP eCLIP11.52□□□□□ -0.572e-7■■■□□ 16.8
TRIM28-210ENST00000597618 CLLU1OSQ5K130 101 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 MIS18BP1Q6P0N0 1132 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CASC1Q6TDU7 716 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 NFXL1Q6ZNB6 911 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CABP7Q86V35 215 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 PPFIBP1Q86W92 1011 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CCDC60Q8IWA6 550 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-210ENST00000597618 SIX5Q8N196 739 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 VPS52Q8N1B4 723 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CMTR1Q8N1G2 835 aaKnown RBP11.52□□□□□ -0.57
TRIM28-210ENST00000597618 METTL13Q8N6R0 699 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 RNF169Q8NCN4 708 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 BBXQ8WY36 941 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-210ENST00000597618 MAP7D2Q96T17 732 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 MTA3Q9BTC8 594 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 ZBP1Q9H171 429 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 RWDD1Q9H446 243 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-210ENST00000597618 SFXN1Q9H9B4 322 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 CEP131Q9UPN4 1083 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 TAF6LQ9Y6J9 622 aa11.52□□□□□ -0.57
TRIM28-210ENST00000597618 OTOGLQ3ZCN5 2332 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 A0A0U1RQF3 1178 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 CCDC69A6NI79 296 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 SPDYE4A6NLX3 237 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 DDX39AO00148 427 aaKnown RBP11.51□□□□□ -0.57
TRIM28-210ENST00000597618 MEIS1O00470 390 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 FOSP01100 380 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-210ENST00000597618 EIF4BP23588 611 aaKnown RBP11.51□□□□□ -0.57
TRIM28-210ENST00000597618 POLGP54098 1239 aaPredicted RBP11.51□□□□□ -0.57
TRIM28-210ENST00000597618 BCAR1P56945 870 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 PTH1RQ03431 593 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 AAMPQ13685 434 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 PUM1Q14671 1186 aaKnown RBP eCLIP11.51□□□□□ -0.57
TRIM28-210ENST00000597618 TMC5Q6UXY8 1006 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 NIPA1Q7RTP0 329 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 GPR149Q86SP6 731 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 CKAP2LQ8IYA6 745 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 TMTC2Q8N394 836 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 HELQQ8TDG4 1101 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 SLC22A17Q8WUG5 538 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 RUFY2Q8WXA3 655 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 AKT3Q9Y243 479 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 ACACBO00763 2458 aa11.51□□□□□ -0.57
TRIM28-210ENST00000597618 hCG_1642624A0A1W2PR95 340 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 NT5C1B-RDH14C9J2C7 533 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 MAGEB2O15479 319 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 CTSAP10619 480 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 RFX1P22670 979 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 TMOD1P28289 359 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 SREBF1P36956 1147 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 CLCN3P51790 818 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 NLRP11P59045 1033 aaKnown RBP11.5□□□□□ -0.57
TRIM28-210ENST00000597618 SWSAP1Q6NVH7 229 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 KANK3Q6NY19 840 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 PPP1R18Q6NYC8 613 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 ZC3H14Q6PJT7 736 aaKnown RBP11.5□□□□□ -0.57
TRIM28-210ENST00000597618 DDX53Q86TM3 631 aaKnown RBP11.5□□□□□ -0.57
TRIM28-210ENST00000597618 ZNF598Q86UK7 904 aaKnown RBP11.5□□□□□ -0.57
TRIM28-210ENST00000597618 KIAA2013Q8IYS2 634 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 HINFPQ9BQA5 517 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 ANO3Q9BYT9 981 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 KCNK12Q9HB15 430 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 RIC8AQ9NPQ8 531 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 DACT1Q9NYF0 836 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 IGSF9Q9P2J2 1179 aa11.5□□□□□ -0.57
TRIM28-210ENST00000597618 MAFBQ9Y5Q3 323 aaPredicted RBP11.5□□□□□ -0.57
TRIM28-210ENST00000597618 STK25O00506 426 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 SH2B2O14492 632 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-210ENST00000597618 PRC1O43663 620 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 ZC3H11AO75152 810 aaKnown RBP eCLIP11.49□□□□□ -0.57
TRIM28-210ENST00000597618 RXRAP19793 462 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 ATP4AP20648 1035 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 ZNF76P36508 570 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 ADCY7P51828 1080 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 NAPAP54920 295 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 AP3B2Q13367 1082 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 NONOQ15233 471 aaKnown RBP eCLIP11.49□□□□□ -0.57
TRIM28-210ENST00000597618 WWC2Q6AWC2 1192 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 TMTC3Q6ZXV5 915 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 AUTS2Q8WXX7 1259 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 IGSF21Q96ID5 467 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 PGBD1Q96JS3 809 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 TMEM87BQ96K49 555 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 FAM167AQ96KS9 214 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 SCLT1Q96NL6 688 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 EMILIN2Q9BXX0 1053 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 ADAMTS10Q9H324 1103 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 WNT16Q9UBV4 365 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 STK39Q9UEW8 545 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 TCEAL9Q9UHQ7 104 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 DENND4AQ7Z401 1863 aa11.49□□□□□ -0.57
TRIM28-210ENST00000597618 IPO5O00410 1097 aaKnown RBP11.48□□□□□ -0.57
TRIM28-210ENST00000597618 DHX15O43143 795 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms