RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 MUC3AQ02505 3323 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 ABHD14A-ACY1A0A1B0GW23 586 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 ARHGEF35A5YM69 484 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 E9PMD0 336 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 GPR32O75388 356 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 CSDE1O75534 798 aaKnown RBP12.35□□□□□ -0.43
LIG1-211ENST00000596457 RPS6KA5O75582 802 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 BAIAP3O94812 1187 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 UPP2O95045 317 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 LYPLA2O95372 231 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 BMP15O95972 392 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 F13A1P00488 732 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 FGFR4P22455 802 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 PBX2P40425 430 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 RFC5P40937 340 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 GPC3P51654 580 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 CRYBB1P53674 252 aaPredicted RBP12.35□□□□□ -0.43
LIG1-211ENST00000596457 WDR5P61964 334 aaKnown RBP12.35□□□□□ -0.43
LIG1-211ENST00000596457 DEFB103AP81534 67 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 EMC2Q15006 297 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 STK38Q15208 465 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 ARL6IP4Q66PJ3 421 aaKnown RBP12.35□□□□□ -0.43
LIG1-211ENST00000596457 EXOC8Q8IYI6 725 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 MYOCDQ8IZQ8 938 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 SYMPKQ92797 1274 aaKnown RBP12.35□□□□□ -0.43
LIG1-211ENST00000596457 APBB2Q92870 758 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 CDK5RAP3Q96JB5 506 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 NLRP4Q96MN2 994 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 ZNF396Q96N95 335 aaPredicted RBP12.35□□□□□ -0.43
LIG1-211ENST00000596457 GUCD1Q96NT3 240 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 USP28Q96RU2 1077 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 ATP6V0A4Q9HBG4 840 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 PADI3Q9ULW8 664 aa12.35□□□□□ -0.43
LIG1-211ENST00000596457 A0A087WZ62 844 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 IGKV6-21A0A0C4DH24 114 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 TNFRSF10AO00220 468 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 AMHP03971 560 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 SSBP05455 408 aaKnown RBP eCLIP12.34□□□□□ -0.43
LIG1-211ENST00000596457 SRGAP2CP0DJJ0 459 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 XRCC6P12956 609 aaKnown RBP eCLIP12.34□□□□□ -0.43
LIG1-211ENST00000596457 RARRES1P49788 294 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 GRIN1Q05586 938 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 RAB30Q15771 203 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 SPECC1Q5M775 1068 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 CABP7Q86V35 215 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 RASSF8Q8NHQ8 419 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 TMEM40Q8WWA1 233 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 TCP11Q8WWU5 503 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 PRPF31Q8WWY3 499 aaKnown RBP12.34□□□□□ -0.43
LIG1-211ENST00000596457 FAM161BQ96MY7 647 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 SLC9A7Q96T83 725 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 FDXACB1Q9BRP7 624 aaPredicted RBP12.34□□□□□ -0.43
LIG1-211ENST00000596457 NKX2-4Q9H2Z4 354 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 ADAMTS10Q9H324 1103 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 DHX33Q9H6R0 707 aaKnown RBP12.34□□□□□ -0.43
LIG1-211ENST00000596457 POLD4Q9HCU8 107 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 MSRAQ9UJ68 235 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 ST3GAL5Q9UNP4 418 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 PPME1Q9Y570 386 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 KDM3AQ9Y4C1 1321 aa12.34□□□□□ -0.43
LIG1-211ENST00000596457 GPR182O15218 404 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 EFCAB14O75071 495 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 DGAT1O75907 488 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 PDIA4P13667 645 aaKnown RBP12.33□□□□□ -0.44
LIG1-211ENST00000596457 MYOGP15173 224 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 DNAJB2P25686 324 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 UBA7P41226 1012 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 PTPAQ15257 358 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 ODR4Q5SWX8 454 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 FAM102BQ5T8I3 360 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 PADI6Q6TGC4 694 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 USP38Q8NB14 1042 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 PSPC1Q8WXF1 523 aaKnown RBP12.33□□□□□ -0.44
LIG1-211ENST00000596457 CLIC6Q96NY7 704 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 CDX2Q99626 313 aaPredicted RBP12.33□□□□□ -0.44
LIG1-211ENST00000596457 MMTAG2Q9BU76 263 aaKnown RBP12.33□□□□□ -0.44
LIG1-211ENST00000596457 PBX4Q9BYU1 374 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 GCOM2Q9BZD3 368 aaPredicted RBP12.33□□□□□ -0.44
LIG1-211ENST00000596457 CSRNP2Q9H175 543 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 BHMT2Q9H2M3 363 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 XPNPEP1Q9NQW7 623 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 DBR1Q9UK59 544 aaKnown RBP12.33□□□□□ -0.44
LIG1-211ENST00000596457 DNM3Q9UQ16 869 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 COL4A3BPQ9Y5P4 624 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 SQORQ9Y6N5 450 aa12.33□□□□□ -0.44
LIG1-211ENST00000596457 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.32□□□□□ -0.44
LIG1-211ENST00000596457 DENND3A2RUS2 1198 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 ENPP3O14638 875 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 TLL1O43897 1013 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 MUTP22033 750 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 LONP1P36776 959 aaKnown RBP12.32□□□□□ -0.44
LIG1-211ENST00000596457 CDC42EP1Q00587 391 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 LAMTOR4Q0VGL1 99 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 GRB10Q13322 594 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 DHX8Q14562 1220 aaKnown RBP12.32□□□□□ -0.44
LIG1-211ENST00000596457 FAM228AQ86W67 206 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 HERC6Q8IVU3 1022 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 PHOSPHO2Q8TCD6 241 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 TIFAQ96CG3 184 aa12.32□□□□□ -0.44
LIG1-211ENST00000596457 CALML4Q96GE6 196 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms