RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 LARGE1O95461 756 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 EOMESO95936 686 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 LDHCP07864 332 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 HOXB8P17481 243 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 LIG1P18858 919 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 CASTP20810 708 aaKnown RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 GUCY1A2P33402 732 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 MTHFRP42898 656 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 ZNF165P49910 485 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 MMP16P51512 607 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 CNTN2Q02246 1040 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 GPS2Q13227 327 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 SNW1Q13573 536 aaKnown RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 SIM2Q14190 667 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 UBXN2BQ14CS0 331 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 IQCB1Q15051 598 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 FOXD4L6Q3SYB3 417 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 TPRNQ4KMQ1 711 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 PAN2Q504Q3 1202 aaKnown RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 BRDTQ58F21 947 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 CCDC158Q5M9N0 1113 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 SH3PXD2AQ5TCZ1 1133 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 SPTY2D1Q68D10 685 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 KANK3Q6NY19 840 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 FOXD4L3Q6VB84 417 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 RUFY4Q6ZNE9 571 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 ATG9AQ7Z3C6 839 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 METTL16Q86W50 562 aaKnown RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 FCHSD1Q86WN1 690 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 CCDC83Q8IWF9 413 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 LRRC8AQ8IWT6 810 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 CEP57L1Q8IYX8 460 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 CPXCR1Q8N123 301 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 C12orf76Q8N812 135 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 IQUBQ8NA54 791 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 LINS1Q8NG48 757 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 GPR152Q8TDT2 470 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 ZNF384Q8TF68 577 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 LEO1Q8WVC0 666 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 RSAD2Q8WXG1 361 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 DNAAF4Q8WXU2 420 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 LPIN2Q92539 896 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 CLP1Q92989 425 aaKnown RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 P2RX5Q93086 422 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 WNT8BQ93098 351 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 ACSF2Q96CM8 615 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 GPATCH3Q96I76 525 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 SPATA32Q96LK8 384 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 BPIFA3Q9BQP9 254 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 STK31Q9BXU1 1019 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 IL25Q9H293 177 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 ADAM7Q9H2U9 754 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 ATP13A2Q9NQ11 1180 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 HOMER2Q9NSB8 354 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 PDRG1Q9NUG6 133 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 PSD3Q9NYI0 1048 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 RAI14Q9P0K7 980 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 FEZ2Q9UHY8 353 aaPredicted RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 DNAI1Q9UI46 699 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 Q9Y3F1 56 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 NEUROG3Q9Y4Z2 214 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 CYP46A1Q9Y6A2 500 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 MRPL42Q9Y6G3 142 aaKnown RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 MYO5AQ9Y4I1 1855 aaKnown RBP4.7□□□□□ -1.66
LIG3-211ENST00000588713 EMSYQ7Z589 1322 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 LAMA5O15230 3695 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 ABCA12Q86UK0 2595 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 MCM3APO60318 1980 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 TRIP12Q14669 1992 aaPredicted RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 MYO9AB2RTY4 2548 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 PNMA6EA0A0J9YXQ4 647 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 GOLGA6L4A6NEF3 574 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 ERICH4A6NGS2 130 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 CCDC69A6NI79 296 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 RSPH10B2B2RC85 870 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 FOXD2O60548 495 aaPredicted RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 ZRANB2O95218 330 aaKnown RBP eCLIP4.69□□□□□ -1.66
LIG3-211ENST00000588713 MAP4K4O95819 1239 aaPredicted RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 RSPH10BP0C881 870 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 PNMA6AP0CW24 399 aaPredicted RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 SKILP12757 684 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 SNRPBP14678 240 aaKnown RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 CD46P15529 392 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 PSMA5P28066 241 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 THPOP40225 353 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 GSTO1P78417 241 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 ITIH3Q06033 890 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 APOBRQ0VD83 1088 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 SCAPQ12770 1279 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 NFX1Q12986 1120 aaKnown RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 FLIIQ13045 1269 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 RESTQ13127 1097 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 PLEKHG4Q58EX7 1191 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 TSHZ3Q63HK5 1081 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 RNF43Q68DV7 783 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 ATL3Q6DD88 541 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 IQSEC1Q6DN90 963 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 PHLDB3Q6NSJ2 640 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 TAPT1Q6NXT6 567 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 DCLRE1AQ6PJP8 1040 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms