RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 NOSTRINQ8IVI9 506 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 ZNF710Q8N1W2 664 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 MICALL1Q8N3F8 863 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 FIBCD1Q8N539 461 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 C4orf32Q8N8J7 132 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 EIF2AK1Q9BQI3 630 aaKnown RBP16.99■□□□□ 0.31
CLIP3-202ENST00000585466 RNF19AQ9NV58 838 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 PCDHA12Q9UN75 941 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 MRPL42Q9Y6G3 142 aaKnown RBP16.99■□□□□ 0.31
CLIP3-202ENST00000585466 NCOR1O75376 2440 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 POTEMA6NI47 508 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 ST18O60284 1047 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 CSDE1O75534 798 aaKnown RBP16.98■□□□□ 0.31
CLIP3-202ENST00000585466 BAG4O95429 457 aaKnown RBP16.98■□□□□ 0.31
CLIP3-202ENST00000585466 SPATA31C1P0DKV0 1188 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 FGFR4P22455 802 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 YWHABP31946 246 aaKnown RBP16.98■□□□□ 0.31
CLIP3-202ENST00000585466 MCM7P33993 719 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 TXKP42681 527 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 SAFBQ15424 915 aaKnown RBP eCLIP16.98■□□□□ 0.31
CLIP3-202ENST00000585466 SLC24A5Q71RS6 500 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 KSR1Q8IVT5 923 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 CMTR2Q8IYT2 770 aaKnown RBP16.98■□□□□ 0.31
CLIP3-202ENST00000585466 IL27Q8NEV9 243 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 ZSWIM4Q9H7M6 989 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 XPNPEP1Q9NQW7 623 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 C1orf112Q9NSG2 853 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 SUCLA2Q9P2R7 463 aaPredicted RBP16.98■□□□□ 0.31
CLIP3-202ENST00000585466 THEGQ9P2T0 379 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 PPME1Q9Y570 386 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 MUC3AQ02505 3323 aa16.98■□□□□ 0.31
CLIP3-202ENST00000585466 PLXNA4Q9HCM2 1894 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 A0A087WZ62 844 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 DKC1O60832 514 aaKnown RBP eCLIP16.97■□□□□ 0.31
CLIP3-202ENST00000585466 ATP2B1P20020 1258 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 BMPR1AP36894 532 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 ORC2Q13416 577 aaPredicted RBP16.97■□□□□ 0.31
CLIP3-202ENST00000585466 BTG3Q14201 252 aaPredicted RBP16.97■□□□□ 0.31
CLIP3-202ENST00000585466 NBR1Q14596 966 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 ODR4Q5SWX8 454 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 CEP170P1Q96L14 293 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 FDXACB1Q9BRP7 624 aaPredicted RBP16.97■□□□□ 0.31
CLIP3-202ENST00000585466 IFT122Q9HBG6 1241 aa16.97■□□□□ 0.31
CLIP3-202ENST00000585466 DENND3A2RUS2 1198 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 MARCH6O60337 910 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 STAG3L1P0CL83 205 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 ATF7P17544 494 aaPredicted RBP16.96■□□□□ 0.31
CLIP3-202ENST00000585466 CTNNB1P35222 781 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 GPM6BQ13491 265 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 CAMK1Q14012 370 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 ZNF174Q15697 407 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 TTC38Q5R3I4 469 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 FAM102BQ5T8I3 360 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 ZNF598Q86UK7 904 aaKnown RBP16.96■□□□□ 0.31
CLIP3-202ENST00000585466 ZNF410Q86VK4 478 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 TPH2Q8IWU9 490 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 FAM184AQ8NB25 1140 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 NEK9Q8TD19 979 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 NLRP7Q8WX94 980 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 TMEM143Q96AN5 459 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 MRPL38Q96DV4 380 aaKnown RBP16.96■□□□□ 0.31
CLIP3-202ENST00000585466 ELAC1Q9H777 363 aaKnown RBP16.96■□□□□ 0.31
CLIP3-202ENST00000585466 HCSTQ9UBK5 93 aa16.96■□□□□ 0.31
CLIP3-202ENST00000585466 GRM6O15303 877 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 RB1P06400 928 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 RFC5P40937 340 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 TRAPPC10P48553 1259 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 TFF2Q03403 129 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 EMC2Q15006 297 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 PAN2Q504Q3 1202 aaKnown RBP16.95■□□□□ 0.3
CLIP3-202ENST00000585466 RHPN2Q8IUC4 686 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 ATXN2LQ8WWM7 1075 aaKnown RBP16.95■□□□□ 0.3
CLIP3-202ENST00000585466 BACH2Q9BYV9 841 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 MINDY3Q9H8M7 445 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 UPF2Q9HAU5 1272 aaKnown RBP16.95■□□□□ 0.3
CLIP3-202ENST00000585466 TMEM161AQ9NX61 479 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 COL4A3BPQ9Y5P4 624 aa16.95■□□□□ 0.3
CLIP3-202ENST00000585466 A0A087WWV3 80 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 MED24O75448 989 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 OR52Z1P0C646 297 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 FGFR1P11362 822 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 RARRES1P49788 294 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 DNM2P50570 870 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 CDC42EP1Q00587 391 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 COL19A1Q14993 1142 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 XKR9Q5GH70 373 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 CATSPER3Q86XQ3 398 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 ECHDC2Q86YB7 292 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 PRPF31Q8WWY3 499 aaKnown RBP16.94■□□□□ 0.3
CLIP3-202ENST00000585466 SLC7A3Q8WY07 619 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 ASB2Q96Q27 587 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 JPH2Q9BR39 696 aaPredicted RBP16.94■□□□□ 0.3
CLIP3-202ENST00000585466 GCOM2Q9BZD3 368 aaPredicted RBP16.94■□□□□ 0.3
CLIP3-202ENST00000585466 BMP2KQ9NSY1 1161 aaPredicted RBP16.94■□□□□ 0.3
CLIP3-202ENST00000585466 ANKEF1Q9NU02 776 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 RWDD3Q9Y3V2 267 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 PCDHB7Q9Y5E2 793 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 PCDHB6Q9Y5E3 794 aa16.94■□□□□ 0.3
CLIP3-202ENST00000585466 TCF20Q9UGU0 1960 aaKnown RBP16.94■□□□□ 0.3
CLIP3-202ENST00000585466 DNAJB1P25685 340 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms