RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 CLASP2O75122 1294 aaKnown RBP24.72■■□□□ 1.55
SHMT1-210ENST00000583780 NEFLP07196 543 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 CLCN3P51790 818 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 SYNE3Q6ZMZ3 975 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 ZBTB33Q86T24 672 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 CKAP2LQ8IYA6 745 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 SLC39A11Q8N1S5 342 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 ESYT1Q9BSJ8 1104 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 SORCS3Q9UPU3 1222 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 NR2E1Q9Y466 385 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 FAM186AA6NE01 2351 aa24.72■■□□□ 1.55
SHMT1-210ENST00000583780 ZSCAN20P17040 1043 aaPredicted RBP24.71■■□□□ 1.55
SHMT1-210ENST00000583780 EIF4BP23588 611 aaKnown RBP24.71■■□□□ 1.55
SHMT1-210ENST00000583780 PPM1AP35813 382 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 ZNF746Q6NUN9 644 aaPredicted RBP24.71■■□□□ 1.55
SHMT1-210ENST00000583780 EFCAB12Q6NXP0 572 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 ZNF598Q86UK7 904 aaKnown RBP24.71■■□□□ 1.55
SHMT1-210ENST00000583780 UBALD2Q8IYN6 164 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 LRRC43Q8N309 656 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 TMEM105Q8N8V8 129 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 ZNF577Q9BSK1 485 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 GLT8D2Q9H1C3 349 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 TSHZ2Q9NRE2 1034 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 TBC1D22BQ9NU19 505 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 PCDHA10Q9Y5I2 948 aa24.71■■□□□ 1.55
SHMT1-210ENST00000583780 hCG_1984214I3L0E3 225 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 MAGEB2O15479 319 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 CDC27P30260 824 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 ITIH3Q06033 890 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 RTN1Q16799 776 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 TPRNQ4KMQ1 711 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 ZNF713Q8N859 430 aaPredicted RBP24.7■■□□□ 1.54
SHMT1-210ENST00000583780 TCEANC2Q96MN5 208 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 GABBR1Q9UBS5 961 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 DMDP11532 3685 aa24.7■■□□□ 1.54
SHMT1-210ENST00000583780 A0A0U1RQF3 1178 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 WEE2P0C1S8 567 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 MTMR3Q13615 1198 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 SMC1AQ14683 1233 aaKnown RBP24.69■■□□□ 1.54
SHMT1-210ENST00000583780 CES5AQ6NT32 575 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 KANK3Q6NY19 840 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 ASCL5Q7RTU5 278 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 LRRC71Q8N4P6 559 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 ZNF668Q96K58 619 aaPredicted RBP24.69■■□□□ 1.54
SHMT1-210ENST00000583780 NECTIN4Q96NY8 510 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 CEP131Q9UPN4 1083 aa24.69■■□□□ 1.54
SHMT1-210ENST00000583780 NT5C1B-RDH14C9J2C7 533 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 ZBTB43O43298 467 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 EDIL3O43854 480 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 ZNF862O60290 1169 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 CXCL14O95715 111 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 EOMESO95936 686 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 PSAPP07602 524 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 SMAP1Q8IYB5 467 aaPredicted RBP24.68■■□□□ 1.54
SHMT1-210ENST00000583780 ABI1Q8IZP0 508 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 C12orf76Q8N812 135 aaPredicted RBP24.68■■□□□ 1.54
SHMT1-210ENST00000583780 FEZF2Q8TBJ5 459 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 AKT3Q9Y243 479 aa24.68■■□□□ 1.54
SHMT1-210ENST00000583780 ASGR2P07307 311 aa24.67■■□□□ 1.54
SHMT1-210ENST00000583780 FGFR4P22455 802 aa24.67■■□□□ 1.54
SHMT1-210ENST00000583780 GPC3P51654 580 aa24.67■■□□□ 1.54
SHMT1-210ENST00000583780 RNF169Q8NCN4 708 aa24.67■■□□□ 1.54
SHMT1-210ENST00000583780 HELQQ8TDG4 1101 aa24.67■■□□□ 1.54
SHMT1-210ENST00000583780 LIMD1Q9UGP4 676 aa24.67■■□□□ 1.54
SHMT1-210ENST00000583780 VPS13AQ96RL7 3174 aa24.66■■□□□ 1.54
SHMT1-210ENST00000583780 DARSP14868 501 aaKnown RBP24.66■■□□□ 1.54
SHMT1-210ENST00000583780 NBL1P41271 181 aa24.66■■□□□ 1.54
SHMT1-210ENST00000583780 MTHFRP42898 656 aa24.66■■□□□ 1.54
SHMT1-210ENST00000583780 BCAR1P56945 870 aa24.66■■□□□ 1.54
SHMT1-210ENST00000583780 PFKFB3Q16875 520 aaPredicted RBP24.66■■□□□ 1.54
SHMT1-210ENST00000583780 DHX32Q7L7V1 743 aaKnown RBP24.66■■□□□ 1.54
SHMT1-210ENST00000583780 ZDHHC14Q8IZN3 488 aa24.66■■□□□ 1.54
SHMT1-210ENST00000583780 ZNF710Q8N1W2 664 aa24.66■■□□□ 1.54
SHMT1-210ENST00000583780 ZMYND12Q9H0C1 365 aa24.66■■□□□ 1.54
SHMT1-210ENST00000583780 TMOD1P28289 359 aa24.65■■□□□ 1.54
SHMT1-210ENST00000583780 CIITAP33076 1130 aa24.65■■□□□ 1.54
SHMT1-210ENST00000583780 ADD1P35611 737 aaKnown RBP24.65■■□□□ 1.54
SHMT1-210ENST00000583780 METAP2P50579 478 aaKnown RBP eCLIP24.65■■□□□ 1.54
SHMT1-210ENST00000583780 TMEM173Q86WV6 379 aaPredicted RBP24.65■■□□□ 1.54
SHMT1-210ENST00000583780 SLC22A17Q8WUG5 538 aa24.65■■□□□ 1.54
SHMT1-210ENST00000583780 LENG9Q96B70 501 aa24.65■■□□□ 1.54
SHMT1-210ENST00000583780 MAP7D2Q96T17 732 aa24.65■■□□□ 1.54
SHMT1-210ENST00000583780 IRAK3Q9Y616 596 aa24.65■■□□□ 1.54
SHMT1-210ENST00000583780 CSDE1O75534 798 aaKnown RBP24.64■■□□□ 1.54
SHMT1-210ENST00000583780 ADCK5Q3MIX3 580 aa24.64■■□□□ 1.54
SHMT1-210ENST00000583780 RARS2Q5T160 578 aaKnown RBP24.64■■□□□ 1.54
SHMT1-210ENST00000583780 RASEFQ8IZ41 740 aa24.64■■□□□ 1.54
SHMT1-210ENST00000583780 VPS52Q8N1B4 723 aa24.64■■□□□ 1.54
SHMT1-210ENST00000583780 AUTS2Q8WXX7 1259 aa24.64■■□□□ 1.54
SHMT1-210ENST00000583780 ZBP1Q9H171 429 aa24.64■■□□□ 1.54
SHMT1-210ENST00000583780 ANO2Q9NQ90 1003 aa24.64■■□□□ 1.54
SHMT1-210ENST00000583780 NRBP2Q9NSY0 501 aa24.64■■□□□ 1.54
SHMT1-210ENST00000583780 ESYT2A0FGR8 921 aa24.63■■□□□ 1.53
SHMT1-210ENST00000583780 PRR23AA6NEV1 266 aa24.63■■□□□ 1.53
SHMT1-210ENST00000583780 GOLGA8AA7E2F4 631 aa24.63■■□□□ 1.53
SHMT1-210ENST00000583780 GOLGA8BA8MQT2 603 aa24.63■■□□□ 1.53
SHMT1-210ENST00000583780 EPCAMP16422 314 aa24.63■■□□□ 1.53
SHMT1-210ENST00000583780 ALDH7A1P49419 539 aaKnown RBP24.63■■□□□ 1.53
SHMT1-210ENST00000583780 SETQ01105 290 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-210ENST00000583780 TSGA10IPQ3SY00 556 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms