RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MFSD10Q14728 455 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 MARCH8Q5T0T0 291 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 SLC7A3Q8WY07 619 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 EEF2KMTQ96G04 330 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 OLFML3Q9NRN5 406 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 FANCLQ9NW38 375 aa27.74■■■□□ 2.03
SHMT1-207ENST00000580002 BECN2A8MW95 431 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 SLC16A4O15374 487 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 C22orf31O95567 290 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 CAVIN2O95810 425 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 KLRC1P26715 233 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 ARL2P36404 184 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 RFC5P40937 340 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 LHX8Q68G74 356 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 ANKRD40Q6AI12 368 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 FAM178BQ8IXR5 827 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 MYOCDQ8IZQ8 938 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 MCPH1Q8NEM0 835 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 ZNF668Q96K58 619 aaPredicted RBP27.73■■■□□ 2.03
SHMT1-207ENST00000580002 DRC1Q96MC2 740 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 IGKV6-21A0A0C4DH24 114 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 HAS3O00219 553 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 GLRA2P23416 452 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 NPTX2P47972 431 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 CLCN3P51790 818 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 LBX1P52954 281 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 PPFIA1Q13136 1202 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 MTFR1Q15390 333 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 GRIK4Q16099 956 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 COBLL1Q53SF7 1204 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 ZNF484Q5JVG2 852 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 GUF1Q8N442 669 aaKnown RBP27.73■■■□□ 2.03
SHMT1-207ENST00000580002 KLHDC9Q8NEP7 349 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 ENOX1Q8TC92 643 aaKnown RBP27.73■■■□□ 2.03
SHMT1-207ENST00000580002 TIPINQ9BVW5 301 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 HMX1Q9NP08 348 aaPredicted RBP27.73■■■□□ 2.03
SHMT1-207ENST00000580002 SAMSN1Q9NSI8 373 aaKnown RBP27.73■■■□□ 2.03
SHMT1-207ENST00000580002 DNAH12Q6ZR08 3092 aa27.73■■■□□ 2.03
SHMT1-207ENST00000580002 ADGRA3Q8IWK6 1321 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 MYH11P35749 1972 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 SMIM10L2AP0DMW4 78 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 SMIM10L2BP0DMW5 78 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 ZNF200P98182 395 aaPredicted RBP27.72■■■□□ 2.03
SHMT1-207ENST00000580002 MYL5Q02045 173 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 KCNA10Q16322 511 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 BRDTQ58F21 947 aaPredicted RBP27.72■■■□□ 2.03
SHMT1-207ENST00000580002 CCSAPQ6IQ19 270 aaPredicted RBP27.72■■■□□ 2.03
SHMT1-207ENST00000580002 EFCAB12Q6NXP0 572 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 KIFAP3Q92845 792 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 DUSP9Q99956 384 aaKnown RBP27.72■■■□□ 2.03
SHMT1-207ENST00000580002 UNC93B1Q9H1C4 597 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 RWDD2AQ9UIY3 292 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 NFE2L3Q9Y4A8 694 aa27.72■■■□□ 2.03
SHMT1-207ENST00000580002 CCDC169A6NNP5 214 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 NKX3-2P78367 333 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 P2RX5Q93086 422 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 DHTKD1Q96HY7 919 aaPredicted RBP27.71■■■□□ 2.03
SHMT1-207ENST00000580002 STRA6Q9BX79 667 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 LARSQ9P2J5 1176 aaKnown RBP27.71■■■□□ 2.03
SHMT1-207ENST00000580002 CCNE1P24864 410 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 MRE11P49959 708 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 TTI2Q6NXR4 508 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 METTL13Q8N6R0 699 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 PRPF31Q8WWY3 499 aaKnown RBP27.71■■■□□ 2.03
SHMT1-207ENST00000580002 SEL1LQ9UBV2 794 aa27.71■■■□□ 2.03
SHMT1-207ENST00000580002 K7ENM7 598 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 PSMA7O14818 248 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 IKBKBO14920 756 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 ATP1A3P13637 1013 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 STIM1Q13586 685 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 CENPPQ6IPU0 288 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 MTHFD1LQ6UB35 978 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 ZNF507Q8TCN5 953 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 LMBR1Q8WVP7 490 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 KCTD10Q9H3F6 313 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 SPC25Q9HBM1 224 aa27.7■■■□□ 2.02
SHMT1-207ENST00000580002 PPP1R37O75864 691 aa27.69■■■□□ 2.02
SHMT1-207ENST00000580002 ASGR1P07306 291 aa27.69■■■□□ 2.02
SHMT1-207ENST00000580002 HSPA1AP0DMV8 641 aaKnown RBP27.69■■■□□ 2.02
SHMT1-207ENST00000580002 HSPA1BP0DMV9 641 aaKnown RBP27.69■■■□□ 2.02
SHMT1-207ENST00000580002 HDAC6Q9UBN7 1215 aa27.69■■■□□ 2.02
SHMT1-207ENST00000580002 USP20Q9Y2K6 914 aa27.69■■■□□ 2.02
SHMT1-207ENST00000580002 GOLGA6L19H0YKK7 550 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 NCKAP1LP55160 1127 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 PLCB2Q00722 1185 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 CT47A1Q5JQC4 288 aaPredicted RBP27.68■■■□□ 2.02
SHMT1-207ENST00000580002 SPATA1Q5VX52 437 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 HAUS6Q7Z4H7 955 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 TMEM161BQ8NDZ6 487 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 SMTNL1A8MU46 457 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 LINC01465Q8N7H1 131 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 PPP1R16BQ96T49 567 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 MTG1Q9BT17 334 aaPredicted RBP27.68■■■□□ 2.02
SHMT1-207ENST00000580002 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.68■■■□□ 2.02
SHMT1-207ENST00000580002 KMT5AQ9NQR1 393 aa27.68■■■□□ 2.02
SHMT1-207ENST00000580002 SUCLA2Q9P2R7 463 aaPredicted RBP27.68■■■□□ 2.02
SHMT1-207ENST00000580002 EVPLQ92817 2033 aa27.67■■■□□ 2.02
SHMT1-207ENST00000580002 DMP1Q13316 513 aaPredicted RBP27.67■■■□□ 2.02
SHMT1-207ENST00000580002 CAPSQ13938 189 aa27.67■■■□□ 2.02
SHMT1-207ENST00000580002 NBPF20Q3BBV1 942 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms