RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SGCZQ96LD1 299 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 CCDC138Q96M89 665 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 ZFYVE21Q9BQ24 234 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 ALG1Q9BT22 464 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 DSCC1Q9BVC3 393 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 APOL5Q9BWW9 433 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 PRDM14Q9GZV8 571 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 FAM204AQ9H8W3 233 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 GPRC5CQ9NQ84 441 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 RNF123Q5XPI4 1314 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 VPS8Q8N3P4 1428 aa6.93□□□□□ -1.3
VPS53-219ENST00000576019 SETXQ7Z333 2677 aaKnown RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 CCDC66A2RUB6 948 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 H0Y8X5 98 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 MEIS1O00470 390 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 ITIH2P19823 946 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 AKAP5P24588 427 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 GRK2P25098 689 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 ADH6P28332 368 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 CAP2P40123 477 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 GPR3P46089 330 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 TM4SF4P48230 202 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 PAK1Q13153 545 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 PUM3Q15397 648 aaKnown RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 LILRA6Q6PI73 481 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 CCDC174Q6PII3 467 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 OVCH2Q7RTZ1 564 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 EFHBQ8N7U6 833 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 TTLL6Q8N841 843 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 KCT2Q8NC54 265 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 GALNT11Q8NCW6 608 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 PPHLN1Q8NEY8 458 aaKnown RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 DNAJB8Q8NHS0 232 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 FRS2Q8WU20 508 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 JADE3Q92613 823 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 ISL2Q96A47 359 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 VWCEQ96DN2 955 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 GMCL1Q96IK5 515 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 FAM193BQ96PV7 902 aaPredicted RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 PRAM1Q96QH2 718 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 TBCBQ99426 244 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 MDFIQ99750 246 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 MCMBPQ9BTE3 642 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 GTPBP4Q9BZE4 634 aaKnown RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 FOXQ1Q9C009 403 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 TRMT13Q9NUP7 481 aaKnown RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 TMEFF2Q9UIK5 374 aaPredicted RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 SF3B6Q9Y3B4 125 aaKnown RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 TTC21AQ8NDW8 1320 aa6.92□□□□□ -1.3
VPS53-219ENST00000576019 SMG6Q86US8 1419 aaKnown RBP6.92□□□□□ -1.3
VPS53-219ENST00000576019 USP34Q70CQ2 3546 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 LCHNA4D1U4 455 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 RBAK-RBAKDNI3L0D1 243 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 TM4SF5O14894 197 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 MEFVO15553 781 aaPredicted RBP6.91□□□□□ -1.3
VPS53-219ENST00000576019 RNASEH2AO75792 299 aaKnown RBP6.91□□□□□ -1.3
VPS53-219ENST00000576019 LCP1P13796 627 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 GYS1P13807 737 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 CASP2P42575 452 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 SLC9A5Q14940 896 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 TERF2Q15554 542 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 FAM47CQ5HY64 1035 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 JAKMIP3Q5VZ66 844 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 LBX2Q6XYB7 198 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 LDHAL6AQ6ZMR3 332 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 ARMCX6Q7L4S7 300 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 C2orf69Q8N8R5 385 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 KLHL23Q8NBE8 558 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 C1orf131Q8NDD1 294 aaKnown RBP6.91□□□□□ -1.3
VPS53-219ENST00000576019 NPLOC4Q8TAT6 608 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 DIS3LQ8TF46 1054 aaKnown RBP6.91□□□□□ -1.3
VPS53-219ENST00000576019 CCT6BQ92526 530 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 SKA1Q96BD8 255 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 PGBD4Q96DM1 585 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 LRFN3Q9BTN0 628 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 CSRNP2Q9H175 543 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 GPR27Q9NS67 375 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 MINPP1Q9UNW1 487 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 CEP131Q9UPN4 1083 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 C5orf42Q9H799 3197 aa6.91□□□□□ -1.3
VPS53-219ENST00000576019 CDC14CA4D256 554 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 NEURL1BA8MQ27 555 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 PRSS47A8MTI9 375 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 ARNTLO00327 626 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 RNGTTO60942 597 aaKnown RBP6.9□□□□□ -1.3
VPS53-219ENST00000576019 CD3EP07766 207 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 CHKAP35790 457 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 KIAA0753Q2KHM9 967 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 IGF2-ASQ6U949 168 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 RSPO2Q6UXX9 243 aaPredicted RBP6.9□□□□□ -1.3
VPS53-219ENST00000576019 WFDC8Q8IUA0 241 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 SLC41A1Q8IVJ1 513 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 CCDC103Q8IW40 242 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 MIER2Q8N344 545 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 MAFAQ8NHW3 353 aaPredicted RBP6.9□□□□□ -1.3
VPS53-219ENST00000576019 UBASH3BQ8TF42 649 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 LMBR1Q8WVP7 490 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 DPF3Q92784 378 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 HPS3Q969F9 1004 aa6.9□□□□□ -1.3
VPS53-219ENST00000576019 TMEM169Q96HH4 297 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms