RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 EDN1P05305 212 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 CLTBP09497 229 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 IQCF3P0C7M6 154 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 SLFN14P0C7P3 912 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 PRR29P0C7W0 189 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 CKBP12277 381 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 STAT6P42226 847 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 UBE2HP62256 183 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 FAM160A1Q05DH4 1040 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 EHHADHQ08426 723 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 TBC1D8BQ0IIM8 1120 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 GIT2Q14161 759 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 ZNF618Q5T7W0 954 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 KRBA2Q6ZNG9 492 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 CCDC73Q6ZRK6 1079 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 GPBP1Q86WP2 473 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 PRPF31Q8WWY3 499 aaKnown RBP10.33□□□□□ -0.76
VPS35-211ENST00000569950 REEP2Q9BRK0 252 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 FGFBP2Q9BYJ0 223 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 IFT122Q9HBG6 1241 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 CCDC39Q9UFE4 941 aa10.33□□□□□ -0.76
VPS35-211ENST00000569950 COL4A6Q14031 1691 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 PITPNM1O00562 1244 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 HIP1RO75146 1068 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 MCM4P33991 863 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 SYKP43405 635 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 GPC3P51654 580 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 POLGP54098 1239 aaPredicted RBP10.32□□□□□ -0.76
VPS35-211ENST00000569950 RAD51AP2Q09MP3 1159 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 TMEM62Q0P6H9 643 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 CUL4BQ13620 913 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 CAPSQ13938 189 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 DHX8Q14562 1220 aaKnown RBP10.32□□□□□ -0.76
VPS35-211ENST00000569950 TPRNQ4KMQ1 711 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 TAF2Q6P1X5 1199 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 C16orf59Q7L2K0 433 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 TAS1R3Q7RTX0 852 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 IQUBQ8NA54 791 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 PAGE5Q96GU1 130 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 CDK5RAP3Q96JB5 506 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 ZNF668Q96K58 619 aaPredicted RBP10.32□□□□□ -0.76
VPS35-211ENST00000569950 TRIM9Q9C026 710 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 FAM49AQ9H0Q0 323 aaPredicted RBP10.32□□□□□ -0.76
VPS35-211ENST00000569950 POLR3FQ9H1D9 316 aaPredicted RBP10.32□□□□□ -0.76
VPS35-211ENST00000569950 TNMDQ9H2S6 317 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 CUEDC2Q9H467 287 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 MINDY3Q9H8M7 445 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 ATP6V0A4Q9HBG4 840 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 FAM13BQ9NYF5 915 aa10.32□□□□□ -0.76
VPS35-211ENST00000569950 CHD7Q9P2D1 2997 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 TTLL13PA6NNM8 815 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 SFI1A8K8P3 1242 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 DCDC2CA8MYV0 355 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 NBNO60934 754 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 GNAT1P11488 350 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 CYP2C18P33260 490 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 TXLNAP40222 546 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 EPHB4P54760 987 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 MRPS6P82932 125 aaKnown RBP10.31□□□□□ -0.76
VPS35-211ENST00000569950 LAMTOR4Q0VGL1 99 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 IER5Q5VY09 327 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 CDCA2Q69YH5 1023 aaPredicted RBP10.31□□□□□ -0.76
VPS35-211ENST00000569950 MAEAQ7L5Y9 396 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 IFNLR1Q8IU57 520 aaPredicted RBP10.31□□□□□ -0.76
VPS35-211ENST00000569950 C7orf61Q8IZ16 206 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 METTL13Q8N6R0 699 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 GLIS3Q8NEA6 775 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 MCPH1Q8NEM0 835 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 SPATA20Q8TB22 786 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 CAGE1Q8TC20 777 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 SLC7A3Q8WY07 619 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 DDX12PQ92771 950 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 KCNN1Q92952 543 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 TIGD1Q96MW7 591 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 GBP4Q96PP9 640 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 C7orf25Q9BPX7 421 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 STRA6Q9BX79 667 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 CCDC113Q9H0I3 377 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 AGO3Q9H9G7 860 aaKnown RBP10.31□□□□□ -0.76
VPS35-211ENST00000569950 SUGCTQ9HAC7 445 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 DACT1Q9NYF0 836 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 KCND2Q9NZV8 630 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 SUCLA2Q9P2R7 463 aaPredicted RBP10.31□□□□□ -0.76
VPS35-211ENST00000569950 CDY2AQ9Y6F7 541 aa10.31□□□□□ -0.76
VPS35-211ENST00000569950 TTC3P53804 2025 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 GAS2O43903 313 aaKnown RBP10.3□□□□□ -0.76
VPS35-211ENST00000569950 CAND2O75155 1236 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 CSDE1O75534 798 aaKnown RBP10.3□□□□□ -0.76
VPS35-211ENST00000569950 PPP1R37O75864 691 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 TIMP1P01033 207 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 CXCL10P02778 98 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 SSBP05455 408 aaKnown RBP eCLIP10.3□□□□□ -0.76
VPS35-211ENST00000569950 CTSHP09668 335 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 SELPP16109 830 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 THPOP40225 353 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 NLRP11P59045 1033 aaKnown RBP10.3□□□□□ -0.76
VPS35-211ENST00000569950 PTENP60484 403 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 DPYDQ12882 1025 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 LPIN1Q14693 890 aa10.3□□□□□ -0.76
VPS35-211ENST00000569950 AMHR2Q16671 573 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms