RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	TOB2	Q14106	344 aa	Predicted RBP	19	■□□□□ 0.63
CLN3-231	ENST00000568422	CPLX2	Q6PUV4	134 aa	Known RBP	19	■□□□□ 0.63
CLN3-231	ENST00000568422	THNSL1	Q8IYQ7	743 aa		19	■□□□□ 0.63
CLN3-231	ENST00000568422	COLGALT1	Q8NBJ5	622 aa		19	■□□□□ 0.63
CLN3-231	ENST00000568422	SMRP1	Q8NCR6	262 aa		19	■□□□□ 0.63
CLN3-231	ENST00000568422	CDCA3	Q99618	268 aa	Predicted RBP	19	■□□□□ 0.63
CLN3-231	ENST00000568422	TMEM117	Q9H0C3	514 aa		19	■□□□□ 0.63
CLN3-231	ENST00000568422	TLE6	Q9H808	572 aa		19	■□□□□ 0.63
CLN3-231	ENST00000568422	CHMP2A	O43633	222 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	PSMD10	O75832	226 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	FGFR1	P11362	822 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	PLCB3	Q01970	1234 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	TBC1D8B	Q0IIM8	1120 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	MOXD1	Q6UVY6	613 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	RBM23	Q86U06	439 aa	Known RBP	18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	ABI1	Q8IZP0	508 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	BLID	Q8IZY5	108 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	LRRC71	Q8N4P6	559 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	DAGLB	Q8NCG7	672 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	NIFK	Q9BYG3	293 aa	Known RBP	18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	UNC45A	Q9H3U1	944 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	CWH43	Q9H720	699 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	CLEC1B	Q9P126	229 aa		18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	PUF60	Q9UHX1	559 aa	Known RBP	18.99	■□□□□ 0.63
CLN3-231	ENST00000568422	DARS	P14868	501 aa	Known RBP	18.98	■□□□□ 0.63
CLN3-231	ENST00000568422	GPC3	P51654	580 aa		18.98	■□□□□ 0.63
CLN3-231	ENST00000568422	TARBP2	Q15633	366 aa	Known RBP	18.98	■□□□□ 0.63
CLN3-231	ENST00000568422	XKR3	Q5GH77	459 aa		18.98	■□□□□ 0.63
CLN3-231	ENST00000568422	MIER3	Q7Z3K6	550 aa		18.98	■□□□□ 0.63
CLN3-231	ENST00000568422	DACT1	Q9NYF0	836 aa		18.98	■□□□□ 0.63
CLN3-231	ENST00000568422		M0R2N6	131 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	EOMES	O95936	686 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	PPM1A	P35813	382 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	DNM2	P50570	870 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	UGCG	Q16739	394 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	HERC4	Q5GLZ8	1057 aa	Predicted RBP	18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	ECHDC2	Q86YB7	292 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	LRRC43	Q8N309	656 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	RSPH1	Q8WYR4	309 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	MBOAT7	Q96N66	472 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	SCLT1	Q96NL6	688 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	CASD1	Q96PB1	797 aa		18.97	■□□□□ 0.63
CLN3-231	ENST00000568422	TRIO	O75962	3097 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422		A0A0U1RQF3	1178 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	FSCN2	O14926	492 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	GLP2R	O95838	553 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	SRGAP2B	P0DMP2	458 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	ERVFC1	P60507	584 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	KRT17	Q04695	432 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	NONO	Q15233	471 aa	Known RBP eCLIP	18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	DUSP6	Q16828	381 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	B3GNT9	Q6UX72	402 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	RNF135	Q8IUD6	432 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	NLRP7	Q8WX94	980 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	MRPS27	Q92552	414 aa	Known RBP	18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	GCOM2	Q9BZD3	368 aa	Predicted RBP	18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	CHST12	Q9NRB3	414 aa		18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	SEPT9	Q9UHD8	586 aa	Predicted RBP	18.96	■□□□□ 0.63
CLN3-231	ENST00000568422	CDKL5	O76039	1030 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	TDP2	O95551	362 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	HOXD11	P31277	338 aa	Predicted RBP	18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	KCNT2	Q6UVM3	1135 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	TMEM184A	Q6ZMB5	413 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	LRRC55	Q6ZSA7	311 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	KRT25	Q7Z3Z0	450 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	ETNPPL	Q8TBG4	499 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	ZNF558	Q96NG5	402 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	JPH2	Q9BR39	696 aa	Predicted RBP	18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	INO80B	Q9C086	356 aa	Predicted RBP	18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	KCNH6	Q9H252	994 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	NGRN	Q9NPE2	291 aa	Known RBP	18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	RNF19A	Q9NV58	838 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	BARX2	Q9UMQ3	279 aa	Predicted RBP	18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	PCDHGC5	Q9Y5F6	944 aa		18.95	■□□□□ 0.62
CLN3-231	ENST00000568422	IGKV6-21	A0A0C4DH24	114 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	CARNS1	A5YM72	827 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	PER2	O15055	1255 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	ATF7	P17544	494 aa	Predicted RBP	18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	NPY5R	Q15761	445 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	MTERF2	Q49AM1	385 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	GJA10	Q969M2	543 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	TRAIP	Q9BWF2	469 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	MRPL9	Q9BYD2	267 aa	Known RBP	18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	PDRG1	Q9NUG6	133 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	SPG21	Q9NZD8	308 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	HCST	Q9UBK5	93 aa		18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	DDX25	Q9UHL0	483 aa	Known RBP	18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	USP15	Q9Y4E8	981 aa	Predicted RBP	18.94	■□□□□ 0.62
CLN3-231	ENST00000568422	LOC730098	B7Z3J9	87 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	DKC1	O60832	514 aa	Known RBP eCLIP	18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	STBD1	O95210	358 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	XBP1	P17861	261 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	SFPQ	P23246	707 aa	Known RBP eCLIP	18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	PSMC5	P62195	406 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	ZNF598	Q86UK7	904 aa	Known RBP	18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	ZNF410	Q86VK4	478 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	FAM20A	Q96MK3	541 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	CEP89	Q96ST8	783 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	TCF25	Q9BQ70	676 aa		18.93	■□□□□ 0.62
CLN3-231	ENST00000568422	PHF7	Q9BWX1	381 aa	Predicted RBP	18.93	■□□□□ 0.62

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