RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 GDPD5Q8WTR4 605 aa20.93■□□□□ 0.94
CLN3-227ENST00000567495 CLP1Q92989 425 aaKnown RBP20.93■□□□□ 0.94
CLN3-227ENST00000567495 DYDC2Q96IM9 177 aa20.93■□□□□ 0.94
CLN3-227ENST00000567495 EIF2AK1Q9BQI3 630 aaKnown RBP20.93■□□□□ 0.94
CLN3-227ENST00000567495 DHX33Q9H6R0 707 aaKnown RBP20.93■□□□□ 0.94
CLN3-227ENST00000567495 TTC3P53804 2025 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 C9IYK1 514 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 H3BNC9 293 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 ZSCAN20P17040 1043 aaPredicted RBP20.92■□□□□ 0.94
CLN3-227ENST00000567495 U2AF2P26368 475 aaKnown RBP eCLIP20.92■□□□□ 0.94
CLN3-227ENST00000567495 POLGP54098 1239 aaPredicted RBP20.92■□□□□ 0.94
CLN3-227ENST00000567495 NPEPPSP55786 919 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 FAM189BP81408 668 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 PLA2G4FQ68DD2 849 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 C11orf84Q9BUA3 381 aaPredicted RBP20.92■□□□□ 0.94
CLN3-227ENST00000567495 PLVAPQ9BX97 442 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 ELAC1Q9H777 363 aaKnown RBP20.92■□□□□ 0.94
CLN3-227ENST00000567495 WRAP73Q9P2S5 460 aaPredicted RBP20.92■□□□□ 0.94
CLN3-227ENST00000567495 THEGQ9P2T0 379 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 PTPRSQ13332 1948 aa20.92■□□□□ 0.94
CLN3-227ENST00000567495 C5orf67F2Z3F1 127 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 WNT7AO00755 349 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 XRCC6P12956 609 aaKnown RBP eCLIP20.91■□□□□ 0.94
CLN3-227ENST00000567495 BMPR1AP36894 532 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 CYP4A11Q02928 519 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 DRP2Q13474 957 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 CTTNQ14247 550 aaKnown RBP20.91■□□□□ 0.94
CLN3-227ENST00000567495 DSC3Q14574 896 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 TCP11Q8WWU5 503 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 SH2D3AQ9BRG2 576 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 CHST12Q9NRB3 414 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 ANKEF1Q9NU02 776 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 TMEM161AQ9NX61 479 aa20.91■□□□□ 0.94
CLN3-227ENST00000567495 PRUNE2Q8WUY3 3088 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 MGEA5O60502 916 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 OR52Z1P0C646 297 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 SFPQP23246 707 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLN3-227ENST00000567495 CTNNB1P35222 781 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 GPM6BQ13491 265 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 SKIV2LQ15477 1246 aaKnown RBP20.9■□□□□ 0.94
CLN3-227ENST00000567495 XKR9Q5GH70 373 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 TTC38Q5R3I4 469 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 RHPN2Q8IUC4 686 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 PSPC1Q8WXF1 523 aaKnown RBP20.9■□□□□ 0.94
CLN3-227ENST00000567495 MRPL38Q96DV4 380 aaKnown RBP20.9■□□□□ 0.94
CLN3-227ENST00000567495 TMEM60Q9H2L4 133 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 ATP6V0A4Q9HBG4 840 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 DACT1Q9NYF0 836 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 COG5Q9UP83 839 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 PRRC2BQ5JSZ5 2229 aaKnown RBP20.9■□□□□ 0.94
CLN3-227ENST00000567495 TRANK1O15050 2925 aa20.9■□□□□ 0.94
CLN3-227ENST00000567495 ASAP2O43150 1006 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 HOXA2O43364 376 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 MRPS5P82675 430 aaKnown RBP20.89■□□□□ 0.93
CLN3-227ENST00000567495 ZNF174Q15697 407 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 AAK1Q2M2I8 961 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 NAALADL2Q58DX5 795 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 ERMNQ8TAM6 284 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 SYMPKQ92797 1274 aaKnown RBP20.89■□□□□ 0.93
CLN3-227ENST00000567495 TUFT1Q9NNX1 390 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.89■□□□□ 0.93
CLN3-227ENST00000567495 COL4A3BPQ9Y5P4 624 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 EYSQ5T1H1 3165 aa20.89■□□□□ 0.93
CLN3-227ENST00000567495 SIP14410 1827 aa20.88■□□□□ 0.93
CLN3-227ENST00000567495 A0A087WZ62 844 aa20.88■□□□□ 0.93
CLN3-227ENST00000567495 DLL1O00548 723 aa20.88■□□□□ 0.93
CLN3-227ENST00000567495 EMC2Q15006 297 aa20.88■□□□□ 0.93
CLN3-227ENST00000567495 TIGD5Q53EQ6 642 aa20.88■□□□□ 0.93
CLN3-227ENST00000567495 TJAP1Q5JTD0 557 aa20.88■□□□□ 0.93
CLN3-227ENST00000567495 ZNF668Q96K58 619 aaPredicted RBP20.88■□□□□ 0.93
CLN3-227ENST00000567495 CCDC43Q96MW1 224 aaKnown RBP20.88■□□□□ 0.93
CLN3-227ENST00000567495 FDXACB1Q9BRP7 624 aaPredicted RBP20.88■□□□□ 0.93
CLN3-227ENST00000567495 LMAN2LQ9H0V9 348 aa20.88■□□□□ 0.93
CLN3-227ENST00000567495 CUL9Q8IWT3 2517 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 DGAT1O75907 488 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 LINC00271P0C7V0 271 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 MXD4Q14582 209 aaPredicted RBP20.87■□□□□ 0.93
CLN3-227ENST00000567495 ZNF579Q8NAF0 562 aaKnown RBP20.87■□□□□ 0.93
CLN3-227ENST00000567495 PRPF31Q8WWY3 499 aaKnown RBP20.87■□□□□ 0.93
CLN3-227ENST00000567495 RSPH1Q8WYR4 309 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 NLRP4Q96MN2 994 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 POLR3CQ9BUI4 534 aaPredicted RBP20.87■□□□□ 0.93
CLN3-227ENST00000567495 TRAIPQ9BWF2 469 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 PRDM6Q9NQX0 595 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 STK24Q9Y6E0 443 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 MRPL42Q9Y6G3 142 aaKnown RBP20.87■□□□□ 0.93
CLN3-227ENST00000567495 EVPLQ92817 2033 aa20.87■□□□□ 0.93
CLN3-227ENST00000567495 UNC80Q8N2C7 3258 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 A0A0U1RQF3 1178 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 POTEMA6NI47 508 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 H3BQV1 296 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 CD2BP2O95400 341 aaKnown RBP20.86■□□□□ 0.93
CLN3-227ENST00000567495 EOMESO95936 686 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 SKIP12755 728 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 SRGAP1Q7Z6B7 1085 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 P2RX5Q93086 422 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 TMEM143Q96AN5 459 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 ASB2Q96Q27 587 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 NACC1Q96RE7 527 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 MTRQ99707 1265 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms