RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 DIS3Q9Y2L1 958 aaKnown RBP6.82□□□□□ -1.32
CLN3-223ENST00000566472 LOXHD1Q8IVV2 1947 aa6.82□□□□□ -1.32
CLN3-223ENST00000566472 LTBP3Q9NS15 1303 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ZC3H4Q9UPT8 1303 aaKnown RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 PHF20L1A8MW92 1017 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 GOLGA8KD6RF30 607 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 F8VZ95 297 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 CCDC188H7C350 402 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 K7ENM7 598 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 DDX3XO00571 662 aaKnown RBP eCLIP6.81□□□□□ -1.32
CLN3-223ENST00000566472 CLIC2O15247 247 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 MAFGO15525 162 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 DHX15O43143 795 aaKnown RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 NCK2O43639 380 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 OPA1O60313 960 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ZBED4O75132 1171 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 HIP1RO75146 1068 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 RPS6KA5O75582 802 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 TMEM253P0C7T8 217 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ERCC3P19447 782 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 INPP5BP32019 993 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ABCD1P33897 745 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 BAG6P46379 1132 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 QARSP47897 775 aaKnown RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 RARRES1P49788 294 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 OAZ1P54368 228 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 HADHBP55084 474 aaKnown RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 NCKAP1LP55160 1127 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 EN1Q05925 392 aaPredicted RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 CXCL9Q07325 125 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 CETN1Q12798 172 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 RASA3Q14644 834 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 KIF22Q14807 665 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 TKFCQ3LXA3 575 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ALS2CLQ60I27 953 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 DCAF15Q66K64 600 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 DAW1Q8N136 415 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 RASGEF1CQ8N431 466 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 MREGQ8N565 214 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ANKRD13CQ8N6S4 541 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 LRRC57Q8N9N7 239 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 USP38Q8NB14 1042 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 TPCN2Q8NHX9 752 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 SLC30A5Q8TAD4 765 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 RFFLQ8WZ73 363 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 CCDC102AQ96A19 550 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 GPRASP2Q96D09 838 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 C12orf42Q96LP6 360 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 SENP7Q9BQF6 1050 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 SYT11Q9BT88 431 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 LRRC1Q9BTT6 524 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 AS3MTQ9HBK9 375 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 GDF3Q9NR23 364 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 KCNH7Q9NS40 1196 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 FBXO28Q9NVF7 368 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 VPS18Q9P253 973 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 SUCLA2Q9P2R7 463 aaPredicted RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 WRAP73Q9P2S5 460 aaPredicted RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 APEX2Q9UBZ4 518 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 TMEM59LQ9UK28 342 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 DNAJC12Q9UKB3 198 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ADAM21Q9UKJ8 722 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 STXBP5LQ9Y2K9 1186 aa6.81□□□□□ -1.32
CLN3-223ENST00000566472 ZBTB12Q9Y330 459 aaPredicted RBP6.81□□□□□ -1.32
CLN3-223ENST00000566472 PFASO15067 1338 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 A6NNZ2 444 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 SFI1A8K8P3 1242 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 WDR64B1ANS9 1081 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 BHMG1C9JSJ3 638 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 TULP1O00294 542 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 NFIBO00712 420 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 EVI5O60447 810 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 EXOC3O60645 756 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 RNF40O75150 1001 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 SYF2O95926 243 aaKnown RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 FTCDO95954 541 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 IVLP07476 585 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 ZBTB48P10074 688 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 SCP2P22307 547 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 PSMC5P62195 406 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 UBXN2AP68543 259 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 GTF2BQ00403 316 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 ARID5AQ03989 594 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 KCNA1Q09470 495 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 ITGB3BPQ13352 177 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 MTMR1Q13613 665 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 DRAP1Q14919 205 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 PGM5Q15124 567 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 ZYXQ15942 572 aaKnown RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 PPP2R5EQ16537 467 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 TUBB8Q3ZCM7 444 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 ZC2HC1CQ53FD0 456 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 ZNF746Q6NUN9 644 aaPredicted RBP6.8□□□□□ -1.32
CLN3-223ENST00000566472 LEKR1Q6ZMV7 388 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 SND1Q7KZF4 910 aaKnown RBP eCLIP6.8□□□□□ -1.32
CLN3-223ENST00000566472 MIGA2Q7L4E1 593 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 NLRX1Q86UT6 975 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 SYCP3Q8IZU3 236 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 XXYLT1Q8NBI6 393 aa6.8□□□□□ -1.32
CLN3-223ENST00000566472 BANK1Q8NDB2 785 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms