RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ZSCAN22P10073 491 aaPredicted RBP11□□□□□ -0.65
CLN3-220ENST00000566040 DARSP14868 501 aaKnown RBP11□□□□□ -0.65
CLN3-220ENST00000566040 ATF7P17544 494 aaPredicted RBP11□□□□□ -0.65
CLN3-220ENST00000566040 FGFR4P22455 802 aa11□□□□□ -0.65
CLN3-220ENST00000566040 DNAJB2P25686 324 aa11□□□□□ -0.65
CLN3-220ENST00000566040 ARL2P36404 184 aa11□□□□□ -0.65
CLN3-220ENST00000566040 HTRA4P83105 476 aaPredicted RBP11□□□□□ -0.65
CLN3-220ENST00000566040 XKR9Q5GH70 373 aa11□□□□□ -0.65
CLN3-220ENST00000566040 HERC6Q8IVU3 1022 aa11□□□□□ -0.65
CLN3-220ENST00000566040 METTL13Q8N6R0 699 aa11□□□□□ -0.65
CLN3-220ENST00000566040 CEP170P1Q96L14 293 aa11□□□□□ -0.65
CLN3-220ENST00000566040 BLOC1S4Q9NUP1 217 aa11□□□□□ -0.65
CLN3-220ENST00000566040 LRWD1Q9UFC0 647 aa11□□□□□ -0.65
CLN3-220ENST00000566040 ADGRA3Q8IWK6 1321 aa11□□□□□ -0.65
CLN3-220ENST00000566040 A0A087WZ62 844 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 ENPP3O14638 875 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 GJB5O95377 273 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 ATP2A2P16615 1042 aaKnown RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 MUTP22033 750 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 GLRA2P23416 452 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 CCT6AP40227 531 aaKnown RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 RFC5P40937 340 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 CRYBB1P53674 252 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 CAPSQ13938 189 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 AMHR2Q16671 573 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 NAALADL2Q58DX5 795 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 FOXD4L5Q5VV16 416 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 GPR153Q6NV75 609 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 IFNLR1Q8IU57 520 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 LINC00301Q8NCQ3 95 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 SP7Q8TDD2 431 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 SNX29Q8TEQ0 813 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 PRPF31Q8WWY3 499 aaKnown RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 FOXD4L4Q8WXT5 416 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 CLIC6Q96NY7 704 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 SLC9A7Q96T83 725 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 FDXACB1Q9BRP7 624 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 RUSC1Q9BVN2 902 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 TSPYL2Q9H2G4 693 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 SUGCTQ9HAC7 445 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 POLD4Q9HCU8 107 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 DDX19AQ9NUU7 478 aaKnown RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 SUCLA2Q9P2R7 463 aaPredicted RBP10.99□□□□□ -0.65
CLN3-220ENST00000566040 PPME1Q9Y570 386 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 SLC4A7Q9Y6M7 1214 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 XIRP2A4UGR9 3374 aa10.99□□□□□ -0.65
CLN3-220ENST00000566040 TTLL13PA6NNM8 815 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 ZBBXA8MT70 800 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 C9IYK1 514 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 MARCH6O60337 910 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 USO1O60763 962 aaKnown RBP10.98□□□□□ -0.65
CLN3-220ENST00000566040 RPLP2P05387 115 aaKnown RBP10.98□□□□□ -0.65
CLN3-220ENST00000566040 XRCC6P12956 609 aaKnown RBP eCLIP10.98□□□□□ -0.65
CLN3-220ENST00000566040 MARCKSP29966 332 aaPredicted RBP10.98□□□□□ -0.65
CLN3-220ENST00000566040 GATMP50440 423 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 LAMTOR4Q0VGL1 99 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 SLC39A14Q15043 492 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 ARSHQ5FYA8 562 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 SPECC1Q5M775 1068 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 AXDND1Q5T1B0 1012 aaPredicted RBP10.98□□□□□ -0.65
CLN3-220ENST00000566040 IER5Q5VY09 327 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 DTHD1Q6ZMT9 781 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 RSPH3Q86UC2 560 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 SEPT8Q92599 483 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 APBB2Q92870 758 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 TNPO1Q92973 898 aaKnown RBP10.98□□□□□ -0.65
CLN3-220ENST00000566040 TOP1MTQ969P6 601 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 ZNF689Q96CS4 500 aaPredicted RBP10.98□□□□□ -0.65
CLN3-220ENST00000566040 EPSTI1Q96J88 318 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 CSRNP2Q9H175 543 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 NKX2-4Q9H2Z4 354 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 MTMR10Q9NXD2 777 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 ST3GAL5Q9UNP4 418 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 KIAA1024Q9UPX6 916 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 AKT3Q9Y243 479 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 COL4A3BPQ9Y5P4 624 aa10.98□□□□□ -0.65
CLN3-220ENST00000566040 PRRC2BQ5JSZ5 2229 aaKnown RBP10.98□□□□□ -0.65
CLN3-220ENST00000566040 CITO14578 2027 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 BRWD1Q9NSI6 2320 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 DKC1O60832 514 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLN3-220ENST00000566040 DGAT1O75907 488 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 EYA4O95677 639 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 CA3P07451 260 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 ACTN1P12814 892 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 EIF4BP23588 611 aaKnown RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 HOXA11P31270 313 aaPredicted RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 POLGP54098 1239 aaPredicted RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 SLC12A3P55017 1021 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 TAP1Q03518 808 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 CEBPZQ03701 1054 aaKnown RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 IKBKEQ14164 716 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 UBXN11Q5T124 520 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 CDCA2Q69YH5 1023 aaPredicted RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 PADI6Q6TGC4 694 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 C1orf186Q6ZWK4 172 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 TAS1R3Q7RTX0 852 aa10.97□□□□□ -0.65
CLN3-220ENST00000566040 ZNF598Q86UK7 904 aaKnown RBP10.97□□□□□ -0.65
CLN3-220ENST00000566040 ZNF410Q86VK4 478 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms