RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 DIS3L2Q8IYB7 885 aaKnown RBP16.7■□□□□ 0.26
CLN3-213ENST00000565047 SPPL3Q8TCT6 385 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 NECAB3Q96P71 396 aaPredicted RBP16.7■□□□□ 0.26
CLN3-213ENST00000565047 MTMR9Q96QG7 549 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 MAP7D2Q96T17 732 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 UHRF1Q96T88 793 aaPredicted RBP16.7■□□□□ 0.26
CLN3-213ENST00000565047 C11orf84Q9BUA3 381 aaPredicted RBP16.7■□□□□ 0.26
CLN3-213ENST00000565047 LMAN2LQ9H0V9 348 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 UBE2ZQ9H832 354 aaPredicted RBP16.7■□□□□ 0.26
CLN3-213ENST00000565047 RGL1Q9NZL6 768 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 PCDHB7Q9Y5E2 793 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 BRWD1Q9NSI6 2320 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 KIAA1671Q9BY89 1806 aa16.7■□□□□ 0.26
CLN3-213ENST00000565047 DENND3A2RUS2 1198 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 SLITRK3O94933 977 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 ITGB1P05556 798 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 RBM25P49756 843 aaKnown RBP16.69■□□□□ 0.26
CLN3-213ENST00000565047 NPEPPSP55786 919 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 CTC1Q2NKJ3 1217 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 TIGD5Q53EQ6 642 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 NAALADL2Q58DX5 795 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 SLFN12Q8IYM2 578 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.69■□□□□ 0.26
CLN3-213ENST00000565047 NEK9Q8TD19 979 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 HSD17B14Q9BPX1 270 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 LLPHQ9BRT6 129 aaKnown RBP16.69■□□□□ 0.26
CLN3-213ENST00000565047 DHX33Q9H6R0 707 aaKnown RBP16.69■□□□□ 0.26
CLN3-213ENST00000565047 CYP26B1Q9NR63 512 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 TMEM161AQ9NX61 479 aa16.69■□□□□ 0.26
CLN3-213ENST00000565047 FNDC1Q4ZHG4 1894 aaPredicted RBP16.69■□□□□ 0.26
CLN3-213ENST00000565047 ZBTB39O15060 712 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 CSDE1O75534 798 aaKnown RBP16.68■□□□□ 0.26
CLN3-213ENST00000565047 FGFR1P11362 822 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 FGFR4P22455 802 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 LTBRP36941 435 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 CDC42EP1Q00587 391 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 LEXMQ3ZCV2 418 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 PAN2Q504Q3 1202 aaKnown RBP16.68■□□□□ 0.26
CLN3-213ENST00000565047 LRRC55Q6ZSA7 311 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 ZNF598Q86UK7 904 aaKnown RBP16.68■□□□□ 0.26
CLN3-213ENST00000565047 CASD1Q96PB1 797 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 TRAIPQ9BWF2 469 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 NSUN3Q9H649 340 aaKnown RBP16.68■□□□□ 0.26
CLN3-213ENST00000565047 CWH43Q9H720 699 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 ALG13Q9NP73 1137 aaKnown RBP16.68■□□□□ 0.26
CLN3-213ENST00000565047 HCSTQ9UBK5 93 aa16.68■□□□□ 0.26
CLN3-213ENST00000565047 TCF20Q9UGU0 1960 aaKnown RBP16.68■□□□□ 0.26
CLN3-213ENST00000565047 A0A087WZ62 844 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 A0A0U1RQF3 1178 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 LYPLA2O95372 231 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 ATF7P17544 494 aaPredicted RBP16.67■□□□□ 0.26
CLN3-213ENST00000565047 HYAL1Q12794 435 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 ECHDC2Q86YB7 292 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 KSR1Q8IVT5 923 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 CCDC83Q8IWF9 413 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 KLHL23Q8NBE8 558 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 PABPC5Q96DU9 382 aaKnown RBP16.67■□□□□ 0.26
CLN3-213ENST00000565047 DYDC2Q96IM9 177 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 FDXACB1Q9BRP7 624 aaPredicted RBP16.67■□□□□ 0.26
CLN3-213ENST00000565047 LXNQ9BS40 222 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 IFT122Q9HBG6 1241 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 BRMS1Q9HCU9 246 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 SUCLA2Q9P2R7 463 aaPredicted RBP16.67■□□□□ 0.26
CLN3-213ENST00000565047 LRFN2Q9ULH4 789 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 PPME1Q9Y570 386 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 BDP1A6H8Y1 2624 aa16.67■□□□□ 0.26
CLN3-213ENST00000565047 MYO7AQ13402 2215 aa16.66■□□□□ 0.26
CLN3-213ENST00000565047 YWHABP31946 246 aaKnown RBP16.66■□□□□ 0.26
CLN3-213ENST00000565047 ZNF410Q86VK4 478 aa16.66■□□□□ 0.26
CLN3-213ENST00000565047 NLRP7Q8WX94 980 aa16.66■□□□□ 0.26
CLN3-213ENST00000565047 TMEM60Q9H2L4 133 aa16.66■□□□□ 0.26
CLN3-213ENST00000565047 ATP6V0A4Q9HBG4 840 aa16.66■□□□□ 0.26
CLN3-213ENST00000565047 TYW1Q9NV66 732 aaKnown RBP16.66■□□□□ 0.26
CLN3-213ENST00000565047 RNF216Q9NWF9 866 aaPredicted RBP16.66■□□□□ 0.26
CLN3-213ENST00000565047 PCDHA12Q9UN75 941 aa16.66■□□□□ 0.26
CLN3-213ENST00000565047 TBKBP1A7MCY6 615 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 DKC1O60832 514 aaKnown RBP eCLIP16.65■□□□□ 0.26
CLN3-213ENST00000565047 BAG4O95429 457 aaKnown RBP16.65■□□□□ 0.26
CLN3-213ENST00000565047 IRS1P35568 1242 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 FOSBP53539 338 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 GUCY1B3Q02153 619 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 CTTNQ14247 550 aaKnown RBP16.65■□□□□ 0.26
CLN3-213ENST00000565047 CALCRLQ16602 461 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 CLLU1OSQ5K130 101 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 NCAPH2Q6IBW4 605 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 RHPN2Q8IUC4 686 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 FBXO18Q8NFZ0 1043 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 POF1BQ8WVV4 589 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 CEP170P1Q96L14 293 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 ZSCAN31Q96LW9 406 aaPredicted RBP16.65■□□□□ 0.26
CLN3-213ENST00000565047 EIF2AK1Q9BQI3 630 aaKnown RBP16.65■□□□□ 0.26
CLN3-213ENST00000565047 GCOM2Q9BZD3 368 aaPredicted RBP16.65■□□□□ 0.26
CLN3-213ENST00000565047 ZSWIM4Q9H7M6 989 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 TTC12Q9H892 705 aaPredicted RBP16.65■□□□□ 0.26
CLN3-213ENST00000565047 CHST12Q9NRB3 414 aa16.65■□□□□ 0.26
CLN3-213ENST00000565047 NCOR1O75376 2440 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 NEMFO60524 1076 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 ZSCAN20P17040 1043 aaPredicted RBP16.64■□□□□ 0.25
CLN3-213ENST00000565047 KCNA5P22460 613 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 GTF2F1P35269 517 aaKnown RBP eCLIP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms