RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 RPAINQ86UA6 219 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 CAGE1Q8TC20 777 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 RAD54LQ92698 747 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 STAMQ92783 540 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 OSMRQ99650 979 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 MTRQ99707 1265 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 GDF15Q99988 308 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 ADAMTS10Q9H324 1103 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 AGO3Q9H9G7 860 aaKnown RBP10.9□□□□□ -0.66
CLK3-208ENST00000562626 ATP6V1DQ9Y5K8 247 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 NR2E3Q9Y5X4 410 aa10.9□□□□□ -0.66
CLK3-208ENST00000562626 ARHGEF35A5YM69 484 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 MAGEB2O15479 319 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 DGAT1O75907 488 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 SSBP05455 408 aaKnown RBP eCLIP10.89□□□□□ -0.67
CLK3-208ENST00000562626 PFKFB1P16118 471 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 GLRA2P23416 452 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 ARL2P36404 184 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 RFC5P40937 340 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 GPC3P51654 580 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 NLRP11P59045 1033 aaKnown RBP10.89□□□□□ -0.67
CLK3-208ENST00000562626 LPIN1Q14693 890 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 C9orf50Q5SZB4 431 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 ADALQ6DHV7 355 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 SYT2Q8N9I0 419 aaPredicted RBP10.89□□□□□ -0.67
CLK3-208ENST00000562626 PRPF31Q8WWY3 499 aaKnown RBP10.89□□□□□ -0.67
CLK3-208ENST00000562626 CALML4Q96GE6 196 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 SCAND2PQ9GZW5 306 aaPredicted RBP10.89□□□□□ -0.67
CLK3-208ENST00000562626 POLR3FQ9H1D9 316 aaPredicted RBP10.89□□□□□ -0.67
CLK3-208ENST00000562626 PRO3102Q9H379 93 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 MINDY3Q9H8M7 445 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 ATP6V0A4Q9HBG4 840 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 SUCLA2Q9P2R7 463 aaPredicted RBP10.89□□□□□ -0.67
CLK3-208ENST00000562626 DNM3Q9UQ16 869 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 AKT3Q9Y243 479 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 HPSEQ9Y251 543 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 TRPV2Q9Y5S1 764 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 TRIOBPQ9H2D6 2365 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 RALGAPA2Q2PPJ7 1873 aa10.89□□□□□ -0.67
CLK3-208ENST00000562626 ADGRA3Q8IWK6 1321 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 A0A087WZ62 844 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 SLC26A4O43511 780 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 CXCL10P02778 98 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 EDN1P05305 212 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 GHRP10912 638 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 CYP11B2P19099 503 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 FGFR4P22455 802 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 CASP1P29466 404 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 RANBP2P49792 3224 aaKnown RBP10.88□□□□□ -0.67
CLK3-208ENST00000562626 FPGSQ05932 587 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 CAPSQ13938 189 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 FBXO47Q5MNV8 452 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 RHPN2Q8IUC4 686 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 GRAMD1CQ8IYS0 662 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 LINC01599Q8WXQ3 324 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 SLC7A3Q8WY07 619 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 LARP4BQ92615 738 aaKnown RBP10.88□□□□□ -0.67
CLK3-208ENST00000562626 DHX58Q96C10 678 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 CDK5RAP3Q96JB5 506 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.88□□□□□ -0.67
CLK3-208ENST00000562626 FDXACB1Q9BRP7 624 aaPredicted RBP10.88□□□□□ -0.67
CLK3-208ENST00000562626 COL25A1Q9BXS0 654 aaPredicted RBP10.88□□□□□ -0.67
CLK3-208ENST00000562626 CELF4Q9BZC1 486 aaKnown RBP10.88□□□□□ -0.67
CLK3-208ENST00000562626 NT5C3AQ9H0P0 336 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 IFT122Q9HBG6 1241 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 PRKAG2Q9UGJ0 569 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 GINS2Q9Y248 185 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 NOC2LQ9Y3T9 749 aaKnown RBP10.88□□□□□ -0.67
CLK3-208ENST00000562626 COL4A3BPQ9Y5P4 624 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 STK24Q9Y6E0 443 aa10.88□□□□□ -0.67
CLK3-208ENST00000562626 FAM237AA0A1B0GTK4 181 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 MYMKA6NI61 221 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 SFI1A8K8P3 1242 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 POLR2DO15514 142 aaKnown RBP10.87□□□□□ -0.67
CLK3-208ENST00000562626 ACTN4O43707 911 aaKnown RBP10.87□□□□□ -0.67
CLK3-208ENST00000562626 HIP1RO75146 1068 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 CAND2O75155 1236 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 CMA1P23946 247 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 CD52P31358 61 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 NDUFA8P51970 172 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 LAMTOR4Q0VGL1 99 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 TMEM240Q5SV17 173 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 FAM102BQ5T8I3 360 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 IER5Q5VY09 327 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 RRAGBQ5VZM2 374 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 ZNF365Q70YC5 407 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 FAM228AQ86W67 206 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 GPBP1Q86WP2 473 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 CCDC155Q8N6L0 562 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 FSIP1Q8NA03 581 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 RETREG2Q8NC44 543 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 DBF4BQ8NFT6 615 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 RASSF8Q8NHQ8 419 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 NLRP4Q96MN2 994 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 CCDC43Q96MW1 224 aaKnown RBP10.87□□□□□ -0.67
CLK3-208ENST00000562626 MAP7D2Q96T17 732 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 REEP2Q9BRK0 252 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 KIFC3Q9BVG8 833 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 TMX1Q9H3N1 280 aa10.87□□□□□ -0.67
CLK3-208ENST00000562626 IL23AQ9NPF7 189 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms