RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ATL3Q6DD88 541 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 ZNF410Q86VK4 478 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 RHPN2Q8IUC4 686 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 LINC00301Q8NCQ3 95 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 PHOSPHO2Q8TCD6 241 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 TMEM143Q96AN5 459 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 PADI3Q9ULW8 664 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 ZDHHC9Q9Y397 364 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 NOC2LQ9Y3T9 749 aaKnown RBP18.61■□□□□ 0.57
CLK3-207ENST00000562389 COL4A3BPQ9Y5P4 624 aa18.61■□□□□ 0.57
CLK3-207ENST00000562389 ARHGEF35A5YM69 484 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 RPS6KA5O75582 802 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 YEATS4O95619 227 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 EYA4O95677 639 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 ATP2A2P16615 1042 aaKnown RBP18.6■□□□□ 0.57
CLK3-207ENST00000562389 GRB10Q13322 594 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 STK38Q15208 465 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 TMEM119Q4V9L6 283 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 FAM109BQ6ICB4 259 aaPredicted RBP18.6■□□□□ 0.57
CLK3-207ENST00000562389 CABP7Q86V35 215 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 FAM228AQ86W67 206 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 MCPH1Q8NEM0 835 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 NLRP7Q8WX94 980 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 SCLT1Q96NL6 688 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 PNMA5Q96PV4 448 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 FTHL17Q9BXU8 183 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 BHMT2Q9H2M3 363 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 ERVK-5Q9HDB9 667 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 DNM3Q9UQ16 869 aa18.6■□□□□ 0.57
CLK3-207ENST00000562389 E9PMD0 336 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 GPR182O15218 404 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 ASAP2O43150 1006 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 PPP6R2O75170 966 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 DARSP14868 501 aaKnown RBP18.59■□□□□ 0.57
CLK3-207ENST00000562389 EIF4BP23588 611 aaKnown RBP18.59■□□□□ 0.57
CLK3-207ENST00000562389 UBA7P41226 1012 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 DEFB103AP81534 67 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 PADI6Q6TGC4 694 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 KRI1Q8N9T8 703 aaKnown RBP18.59■□□□□ 0.57
CLK3-207ENST00000562389 PRPF31Q8WWY3 499 aaKnown RBP18.59■□□□□ 0.57
CLK3-207ENST00000562389 CDK5RAP3Q96JB5 506 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 ZNF668Q96K58 619 aaPredicted RBP18.59■□□□□ 0.57
CLK3-207ENST00000562389 GCOM2Q9BZD3 368 aaPredicted RBP18.59■□□□□ 0.57
CLK3-207ENST00000562389 CCSER1Q9C0I3 900 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 CSRNP2Q9H175 543 aa18.59■□□□□ 0.57
CLK3-207ENST00000562389 TFIP11Q9UBB9 837 aaKnown RBP18.59■□□□□ 0.57
CLK3-207ENST00000562389 A0A087WZ62 844 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.58■□□□□ 0.56
CLK3-207ENST00000562389 SPTLC2O15270 562 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 AMHP03971 560 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 CYP11B2P19099 503 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 ARL2P36404 184 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 LAMTOR4Q0VGL1 99 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 MXD4Q14582 209 aaPredicted RBP18.58■□□□□ 0.56
CLK3-207ENST00000562389 ZRSR1Q15695 479 aaKnown RBP18.58■□□□□ 0.56
CLK3-207ENST00000562389 GPR153Q6NV75 609 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 KCNK18Q7Z418 384 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 KSR1Q8IVT5 923 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 CALML4Q96GE6 196 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 LRCH3Q96II8 777 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 NLRP4Q96MN2 994 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 CLIC6Q96NY7 704 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 FDXACB1Q9BRP7 624 aaPredicted RBP18.58■□□□□ 0.56
CLK3-207ENST00000562389 CFAP45Q9UL16 551 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 ST3GAL5Q9UNP4 418 aa18.58■□□□□ 0.56
CLK3-207ENST00000562389 LAMA3Q16787 3333 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 GRXCR1A8MXD5 290 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 DDIT3P35638 169 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 DNM1Q05193 864 aaKnown RBP18.57■□□□□ 0.56
CLK3-207ENST00000562389 NFX1Q12986 1120 aaKnown RBP18.57■□□□□ 0.56
CLK3-207ENST00000562389 FOXD4L6Q3SYB3 417 aaPredicted RBP18.57■□□□□ 0.56
CLK3-207ENST00000562389 FOXD4L3Q6VB84 417 aaPredicted RBP18.57■□□□□ 0.56
CLK3-207ENST00000562389 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.57■□□□□ 0.565e-12■■□□□ 14.3
CLK3-207ENST00000562389 HERC6Q8IVU3 1022 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 LINC01599Q8WXQ3 324 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 PBX4Q9BYU1 374 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 INO80BQ9C086 356 aaPredicted RBP18.57■□□□□ 0.56
CLK3-207ENST00000562389 POLR3FQ9H1D9 316 aaPredicted RBP18.57■□□□□ 0.56
CLK3-207ENST00000562389 TMX1Q9H3N1 280 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 IFT122Q9HBG6 1241 aa18.57■□□□□ 0.56
CLK3-207ENST00000562389 TTC3P53804 2025 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 GLRA2P23416 452 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 POU5F1BQ06416 359 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 TFDP1Q14186 410 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 KARSQ15046 597 aaKnown RBP18.56■□□□□ 0.56
CLK3-207ENST00000562389 RAB30Q15771 203 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 SPECC1Q5M775 1068 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 RNF149Q8NC42 400 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 KCNG4Q8TDN1 519 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 ASAP3Q8TDY4 903 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 SYMPKQ92797 1274 aaKnown RBP18.56■□□□□ 0.56
CLK3-207ENST00000562389 EPSTI1Q96J88 318 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 PLIN2Q99541 437 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 TSPYL2Q9H2G4 693 aaPredicted RBP18.56■□□□□ 0.56
CLK3-207ENST00000562389 GPRC5CQ9NQ84 441 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 DAXXQ9UER7 740 aaPredicted RBP18.56■□□□□ 0.56
CLK3-207ENST00000562389 ATP6V1DQ9Y5K8 247 aa18.56■□□□□ 0.56
CLK3-207ENST00000562389 TCHHQ07283 1943 aa18.55■□□□□ 0.56
CLK3-207ENST00000562389 ENPP3O14638 875 aa18.55■□□□□ 0.56
CLK3-207ENST00000562389 GJB5O95377 273 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms