RNA–Protein interactions for RNA: ENST00000561425.5

TPM1-232, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-232ENST00000561425 EXOC8Q8IYI6 725 aa23.13■■□□□ 1.29
TPM1-232ENST00000561425 CMTR2Q8IYT2 770 aaKnown RBP23.13■■□□□ 1.29
TPM1-232ENST00000561425 C4orf32Q8N8J7 132 aa23.13■■□□□ 1.29
TPM1-232ENST00000561425 FBXO22Q8NEZ5 403 aa23.13■■□□□ 1.29
TPM1-232ENST00000561425 GDPD5Q8WTR4 605 aa23.13■■□□□ 1.29
TPM1-232ENST00000561425 PPM1EQ8WY54 764 aa23.13■■□□□ 1.29
TPM1-232ENST00000561425 ELAC1Q9H777 363 aaKnown RBP23.13■■□□□ 1.29
TPM1-232ENST00000561425 SUCLA2Q9P2R7 463 aaPredicted RBP23.13■■□□□ 1.29
TPM1-232ENST00000561425 LOXHD1Q8IVV2 1947 aa23.13■■□□□ 1.29
TPM1-232ENST00000561425 ZBTB39O15060 712 aa23.12■■□□□ 1.29
TPM1-232ENST00000561425 MCM7P33993 719 aa23.12■■□□□ 1.29
TPM1-232ENST00000561425 BMPR1AP36894 532 aa23.12■■□□□ 1.29
TPM1-232ENST00000561425 RFC5P40937 340 aa23.12■■□□□ 1.29
TPM1-232ENST00000561425 ZNF410Q86VK4 478 aa23.12■■□□□ 1.29
TPM1-232ENST00000561425 CEP170P1Q96L14 293 aa23.12■■□□□ 1.29
TPM1-232ENST00000561425 RNF216Q9NWF9 866 aaPredicted RBP23.12■■□□□ 1.29
TPM1-232ENST00000561425 PRUNE2Q8WUY3 3088 aa23.12■■□□□ 1.29
TPM1-232ENST00000561425 XRCC6P12956 609 aaKnown RBP eCLIP23.11■■□□□ 1.29
TPM1-232ENST00000561425 TPH2Q8IWU9 490 aa23.11■■□□□ 1.29
TPM1-232ENST00000561425 ATXN2LQ8WWM7 1075 aaKnown RBP23.11■■□□□ 1.29
TPM1-232ENST00000561425 BACH2Q9BYV9 841 aa23.11■■□□□ 1.29
TPM1-232ENST00000561425 RWDD3Q9Y3V2 267 aa23.11■■□□□ 1.29
TPM1-232ENST00000561425 PCDHB7Q9Y5E2 793 aa23.11■■□□□ 1.29
TPM1-232ENST00000561425 TRANK1O15050 2925 aa23.11■■□□□ 1.29
TPM1-232ENST00000561425 PRRC2BQ5JSZ5 2229 aaKnown RBP23.1■■□□□ 1.29
TPM1-232ENST00000561425 DENND3A2RUS2 1198 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 GAS2O43903 313 aaKnown RBP23.1■■□□□ 1.29
TPM1-232ENST00000561425 SPATA31C1P0DKV0 1188 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 ATP2B1P20020 1258 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 TOB1P50616 345 aaPredicted RBP23.1■■□□□ 1.29
TPM1-232ENST00000561425 CYP4A11Q02928 519 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 BTG3Q14201 252 aaPredicted RBP23.1■■□□□ 1.29
TPM1-232ENST00000561425 ZNF174Q15697 407 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 SLC7A3Q8WY07 619 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 ZNF668Q96K58 619 aaPredicted RBP23.1■■□□□ 1.29
TPM1-232ENST00000561425 GCOM2Q9BZD3 368 aaPredicted RBP23.1■■□□□ 1.29
TPM1-232ENST00000561425 IFT122Q9HBG6 1241 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 ANKEF1Q9NU02 776 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 TMEM161AQ9NX61 479 aa23.1■■□□□ 1.29
TPM1-232ENST00000561425 UNC80Q8N2C7 3258 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 A0A087WZ62 844 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 TTC38Q5R3I4 469 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 NLRP7Q8WX94 980 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 MRPL38Q96DV4 380 aaKnown RBP23.09■■□□□ 1.29
TPM1-232ENST00000561425 FDXACB1Q9BRP7 624 aaPredicted RBP23.09■■□□□ 1.29
TPM1-232ENST00000561425 TRAIPQ9BWF2 469 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 PLVAPQ9BX97 442 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 CHST12Q9NRB3 414 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 KIF3AQ9Y496 699 aa23.09■■□□□ 1.29
TPM1-232ENST00000561425 MRPL42Q9Y6G3 142 aaKnown RBP23.09■■□□□ 1.29
TPM1-232ENST00000561425 POTEMA6NI47 508 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 OR52Z1P0C646 297 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 GPM6BQ13491 265 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 XKR9Q5GH70 373 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 RHPN2Q8IUC4 686 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 KSR1Q8IVT5 923 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 INO80BQ9C086 356 aaPredicted RBP23.08■■□□□ 1.29
TPM1-232ENST00000561425 XPNPEP1Q9NQW7 623 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 THEGQ9P2T0 379 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 LRFN2Q9ULH4 789 aa23.08■■□□□ 1.29
TPM1-232ENST00000561425 COL4A4P53420 1690 aaPredicted RBP23.07■■□□□ 1.28
TPM1-232ENST00000561425 A0A0U1RQF3 1178 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 ASAP2O43150 1006 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 ZSCAN20P17040 1043 aaPredicted RBP23.07■■□□□ 1.28
TPM1-232ENST00000561425 GATMP50440 423 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 POLGP54098 1239 aaPredicted RBP23.07■■□□□ 1.28
TPM1-232ENST00000561425 NAALADL2Q58DX5 795 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 FAM102BQ5T8I3 360 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 CATSPER3Q86XQ3 398 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 MICALL1Q8N3F8 863 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 TCP11Q8WWU5 503 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 PRPF31Q8WWY3 499 aaKnown RBP23.07■■□□□ 1.28
TPM1-232ENST00000561425 P2RX5Q93086 422 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 POLR3CQ9BUI4 534 aaPredicted RBP23.07■■□□□ 1.28
TPM1-232ENST00000561425 TUFT1Q9NNX1 390 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 RNF19AQ9NV58 838 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 COL4A3BPQ9Y5P4 624 aa23.07■■□□□ 1.28
TPM1-232ENST00000561425 DLL1O00548 723 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 CSDE1O75534 798 aaKnown RBP23.06■■□□□ 1.28
TPM1-232ENST00000561425 FGFR4P22455 802 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 TECP42680 631 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 RARRES1P49788 294 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 FXR2P51116 673 aaKnown RBP eCLIP23.06■■□□□ 1.28
TPM1-232ENST00000561425 EMC2Q15006 297 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 ZNF598Q86UK7 904 aaKnown RBP23.06■■□□□ 1.28
TPM1-232ENST00000561425 ECHDC2Q86YB7 292 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 TMEM143Q96AN5 459 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 ASB2Q96Q27 587 aa23.06■■□□□ 1.28
TPM1-232ENST00000561425 COL25A1Q9BXS0 654 aaPredicted RBP23.06■■□□□ 1.28
TPM1-232ENST00000561425 NOL7Q9UMY1 257 aaKnown RBP23.06■■□□□ 1.28
TPM1-232ENST00000561425 RPA1P27694 616 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 GJB2P29033 226 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 CTNNB1P35222 781 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 POU5F1BQ06416 359 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 LAMTOR4Q0VGL1 99 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 PTPROQ16827 1216 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 SRGAP1Q7Z6B7 1085 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 FERMT3Q86UX7 667 aa23.05■■□□□ 1.28
TPM1-232ENST00000561425 PSPC1Q8WXF1 523 aaKnown RBP23.05■■□□□ 1.28
TPM1-232ENST00000561425 C11orf84Q9BUA3 381 aaPredicted RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms