RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 PRKCEQ02156 737 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 SMAD2Q15796 467 aaKnown RBP13.15□□□□□ -0.3
USP3-220ENST00000561381 SPOUT1Q5T280 376 aaKnown RBP13.15□□□□□ -0.3
USP3-220ENST00000561381 RUFY3Q7L099 469 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 LINC01465Q8N7H1 131 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 ADAMTS10Q9H324 1103 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 UNC45AQ9H3U1 944 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 TYW1Q9NV66 732 aaKnown RBP13.15□□□□□ -0.3
USP3-220ENST00000561381 PRKAG3Q9UGI9 489 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 CD207Q9UJ71 328 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 AKT3Q9Y243 479 aa13.15□□□□□ -0.3
USP3-220ENST00000561381 C5orf42Q9H799 3197 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 MAGEB2O15479 319 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 GAS7O60861 476 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 TDP2O95551 362 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 GLP2RO95838 553 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 OATP04181 439 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 USP11P51784 963 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 FAM189BP81408 668 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 RBM10P98175 930 aaKnown RBP13.14□□□□□ -0.31
USP3-220ENST00000561381 SMAD4Q13485 552 aaKnown RBP13.14□□□□□ -0.31
USP3-220ENST00000561381 ODR4Q5SWX8 454 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 LRCH2Q5VUJ6 765 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 EFHBQ8N7U6 833 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 TBCKQ8TEA7 893 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 SLC5A5Q92911 643 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 RNF25Q96BH1 459 aaPredicted RBP13.14□□□□□ -0.31
USP3-220ENST00000561381 MSLNLQ96KJ4 702 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 FAM167AQ96KS9 214 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 AIFM3Q96NN9 605 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 CWH43Q9H720 699 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 ATP6V0A4Q9HBG4 840 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 ZSWIM6Q9HCJ5 1215 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 SH3GLB2Q9NR46 395 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 RNF19AQ9NV58 838 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 CLEC1BQ9P126 229 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 CEP131Q9UPN4 1083 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 HCN4Q9Y3Q4 1203 aa13.14□□□□□ -0.31
USP3-220ENST00000561381 TMEM150BA6NC51 233 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 PRR33A8MZF0 331 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 PER2O15055 1255 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 DCXO43602 365 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 DTNBO60941 627 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 FGF18O76093 207 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 ALADP13716 330 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 FGFR4P22455 802 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 ERVFC1P60507 584 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 SSRP1Q08945 709 aaKnown RBP13.13□□□□□ -0.31
USP3-220ENST00000561381 STK3Q13188 491 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 DRP2Q13474 957 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 NPY5RQ15761 445 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 LRRC55Q6ZSA7 311 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 EFCAB3Q8N7B9 438 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 COLGALT1Q8NBJ5 622 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 MICAL1Q8TDZ2 1067 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 PPP2R3CQ969Q6 453 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 MAP7D2Q96T17 732 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 RIT2Q99578 217 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 SH2D3AQ9BRG2 576 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 TEKT3Q9BXF9 490 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 UPF3BQ9BZI7 483 aaKnown RBP13.13□□□□□ -0.31
USP3-220ENST00000561381 NRBP2Q9NSY0 501 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 TMEM161AQ9NX61 479 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 BARX2Q9UMQ3 279 aaPredicted RBP13.13□□□□□ -0.31
USP3-220ENST00000561381 PCDHA4Q9UN74 947 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 PCDHB12Q9Y5F1 795 aa13.13□□□□□ -0.31
USP3-220ENST00000561381 M0R2N6 131 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 CSDE1O75534 798 aaKnown RBP13.12□□□□□ -0.31
USP3-220ENST00000561381 PSMD10O75832 226 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 STBD1O95210 358 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 EIF4BP23588 611 aaKnown RBP13.12□□□□□ -0.31
USP3-220ENST00000561381 TMOD1P28289 359 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 PBX3P40426 434 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 GPC3P51654 580 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 JAK3P52333 1124 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 TARBP2Q15633 366 aaKnown RBP13.12□□□□□ -0.31
USP3-220ENST00000561381 Q4G0T1 1027 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 TRIM22Q8IYM9 498 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 THNSL1Q8IYQ7 743 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 BLIDQ8IZY5 108 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 SMRP1Q8NCR6 262 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 VN1R2Q8NFZ6 395 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 CASD1Q96PB1 797 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 ELAC1Q9H777 363 aaKnown RBP13.12□□□□□ -0.31
USP3-220ENST00000561381 TLE6Q9H808 572 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 TLR9Q9NR96 1032 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 AAASQ9NRG9 546 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 MUTYHQ9UIF7 546 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 CYP46A1Q9Y6A2 500 aa13.12□□□□□ -0.31
USP3-220ENST00000561381 CPLX1O14810 134 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 FSCN2O14926 492 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 EYA4O95677 639 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 DARSP14868 501 aaKnown RBP13.11□□□□□ -0.31
USP3-220ENST00000561381 SFNP31947 248 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 UBE3AQ05086 875 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 TBC1D8BQ0IIM8 1120 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 MTERF2Q49AM1 385 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 B3GNT9Q6UX72 402 aa13.11□□□□□ -0.31
USP3-220ENST00000561381 FAM43BQ6ZT52 329 aaPredicted RBP13.11□□□□□ -0.31
USP3-220ENST00000561381 MIER3Q7Z3K6 550 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms