RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 GIMAP8Q8ND71 665 aaPredicted RBP11.81□□□□□ -0.52
USP3-206ENST00000558157 CFAP61Q8NHU2 1237 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 OXER1Q8TDS5 423 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 TMEM47Q9BQJ4 181 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 ARHGEF3Q9NR81 526 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 PGAP2Q9UHJ9 254 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP3-206ENST00000558157 ABCB11O95342 1321 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 UBE2Q2LH0YL09 131 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 SART1O43290 800 aaKnown RBP11.81□□□□□ -0.52
USP3-206ENST00000558157 PPFIA2O75334 1257 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 RHOBTB3O94955 611 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 GDF11O95390 407 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 ALDH3A1P30838 453 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 ERVK-9P63128 1117 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 RASA3Q14644 834 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 ASTE1Q2TB18 679 aaPredicted RBP11.81□□□□□ -0.52
USP3-206ENST00000558157 KRT71Q3SY84 523 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 CERKLQ49MI3 558 aaPredicted RBP11.81□□□□□ -0.52
USP3-206ENST00000558157 MEI1Q5TIA1 1274 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 ARL6IP4Q66PJ3 421 aaKnown RBP11.81□□□□□ -0.52
USP3-206ENST00000558157 TATDN1Q6P1N9 297 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 ARHGAP22Q7Z5H3 698 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 CSGALNACT2Q8N6G5 542 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 PNMA1Q8ND90 353 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 FAM81AQ8TBF8 368 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 MTMR8Q96EF0 704 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.81□□□□□ -0.522e-6■■■□□ 18.4
USP3-206ENST00000558157 TAOK2Q9UL54 1235 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 MYH4Q9Y623 1939 aa11.81□□□□□ -0.52
USP3-206ENST00000558157 TRIM49BA6NDI0 452 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 CCDC188H7C350 402 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 MMEP08473 750 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 CALM1P0DP23 149 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 CALM2P0DP24 149 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 CALM3P0DP25 149 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 RARAP10276 462 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 IMPDH2P12268 514 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 GBP1P32455 592 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 LONP1P36776 959 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 MAGEA8P43361 318 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 MMP13P45452 471 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 MXRA7P84157 204 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 CUL3Q13618 768 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 TNFAIP1Q13829 316 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 CMTR1Q8N1G2 835 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 PGM2Q96G03 612 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 PBKQ96KB5 322 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 GORASP1Q9BQQ3 440 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 PHF20Q9BVI0 1012 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 NOC4LQ9BVI4 516 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 MTMR4Q9NYA4 1195 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 HERC5Q9UII4 1024 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 FBXL5Q9UKA1 691 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 O00370 1275 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 GRIN3BO60391 1043 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 EVI5O60447 810 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 HIP1RO75146 1068 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 PLEKHA8P1O95397 391 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 PLEKP08567 350 aaPredicted RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 CCNE1P24864 410 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 MSH2P43246 934 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 NOVP48745 357 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 PDE6CP51160 858 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 COPS2P61201 443 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 BNIP1Q12981 228 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 RRP1BQ14684 758 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 TTC38Q5R3I4 469 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 ANGEL2Q5VTE6 544 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 TMC3Q7Z5M5 1100 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 B4GALNT2Q8NHY0 566 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 ACTRT1Q8TDG2 376 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 SCFD2Q8WU76 684 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 UBLCP1Q8WVY7 318 aaPredicted RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 TEKT4Q8WW24 435 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 ATXN2LQ8WWM7 1075 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 SEC14L1Q92503 715 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 STAMQ92783 540 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 CNOT6LQ96LI5 555 aaKnown RBP11.8□□□□□ -0.52
USP3-206ENST00000558157 CCDC17Q96LX7 622 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 WDR35Q9P2L0 1181 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 MTMR7Q9Y216 660 aa11.8□□□□□ -0.52
USP3-206ENST00000558157 MYH6P13533 1939 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 DPPA5A6NC42 116 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 RNF8O76064 485 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 MTIF2P46199 727 aaKnown RBP11.79□□□□□ -0.52
USP3-206ENST00000558157 HIRAP54198 1017 aaPredicted RBP11.79□□□□□ -0.52
USP3-206ENST00000558157 PMS1P54277 932 aaKnown RBP11.79□□□□□ -0.52
USP3-206ENST00000558157 NAB2Q15742 525 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 GNPTABQ3T906 1256 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 MIIPQ5JXC2 388 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 ERICH1Q86X53 443 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 RBM12BQ8IXT5 1001 aaKnown RBP11.79□□□□□ -0.52
USP3-206ENST00000558157 OR2W6PQ8NHA6 318 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 TAF4BQ92750 862 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 SYN2Q92777 582 aaPredicted RBP11.79□□□□□ -0.52
USP3-206ENST00000558157 KLHL29Q96CT2 875 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 TEPSINQ96N21 525 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 TRAPPC9Q96Q05 1148 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 RAB3IPQ96QF0 476 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms