RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CATIPQ7Z7H3 387 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 RTN4RL1Q86UN2 441 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-220ENST00000556486 MB21D2Q8IYB1 491 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-220ENST00000556486 TMEM105Q8N8V8 129 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 DNAJB3Q8WWF6 145 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PIBF1Q8WXW3 757 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PPP2R3CQ969Q6 453 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PLVAPQ9BX97 442 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 FAM49AQ9H0Q0 323 aaPredicted RBP11.49□□□□□ -0.57
SCFD1-220ENST00000556486 EHMT1Q9H9B1 1298 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 AGO3Q9H9G7 860 aaKnown RBP11.49□□□□□ -0.57
SCFD1-220ENST00000556486 CDY2AQ9Y6F7 541 aa11.49□□□□□ -0.57
SCFD1-220ENST00000556486 PTPRZ1P23471 2315 aaPredicted RBP11.48□□□□□ -0.57
SCFD1-220ENST00000556486 MEIS2O14770 477 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 GNAT1P11488 350 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 KIF5BP33176 963 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 FOXK2Q01167 660 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 MGAT3Q09327 533 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 FBXO47Q5MNV8 452 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 SPOUT1Q5T280 376 aaKnown RBP11.48□□□□□ -0.57
SCFD1-220ENST00000556486 PDXDC2PQ6P474 469 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 TEX2Q8IWB9 1127 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 KREMEN2Q8NCW0 462 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 P2RX5Q93086 422 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 LZTS2Q9BRK4 669 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 LY9Q9HBG7 655 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 IGSF5Q9NSI5 407 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 PKD2L1Q9P0L9 805 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 ZNF215Q9UL58 517 aaPredicted RBP11.48□□□□□ -0.57
SCFD1-220ENST00000556486 PCDHB9Q9Y5E1 797 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 FRYLO94915 3013 aa11.48□□□□□ -0.57
SCFD1-220ENST00000556486 ID4P47928 161 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 ERVFC1P60507 584 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 DPYDQ12882 1025 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 PPFIA1Q13136 1202 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 GRIK4Q16099 956 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 SWI5Q1ZZU3 235 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 ZNF654Q8IZM8 581 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 TMTC2Q8N394 836 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 GIMAP8Q8ND71 665 aaPredicted RBP11.47□□□□□ -0.57
SCFD1-220ENST00000556486 THAP11Q96EK4 314 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 RIPOR3Q96MK2 946 aa11.47□□□□□ -0.57
SCFD1-220ENST00000556486 FNDC1Q4ZHG4 1894 aaPredicted RBP11.46□□□□□ -0.57
SCFD1-220ENST00000556486 NRCAMQ92823 1304 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 WEE2P0C1S8 567 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 TCF7P36402 384 aaPredicted RBP11.46□□□□□ -0.57
SCFD1-220ENST00000556486 TECP42680 631 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 LIFRP42702 1097 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 GNAQP50148 359 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 KCNH2Q12809 1159 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 TMEM266Q2M3C6 531 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 EML3Q32P44 896 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 MAP7D1Q3KQU3 841 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 PLPP4Q5VZY2 271 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 TSHZ1Q6ZSZ6 1077 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 SCUBE3Q8IX30 993 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 CMTR2Q8IYT2 770 aaKnown RBP11.46□□□□□ -0.57
SCFD1-220ENST00000556486 ADSSL1Q8N142 457 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 ARMC2Q8NEN0 867 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 CTCFLQ8NI51 663 aaPredicted RBP11.46□□□□□ -0.57
SCFD1-220ENST00000556486 TRAPPC12Q8WVT3 735 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 SUSD6Q92537 303 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 GPRASP2Q96D09 838 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 MRRFQ96E11 262 aaKnown RBP11.46□□□□□ -0.57
SCFD1-220ENST00000556486 RRP36Q96EU6 259 aaKnown RBP11.46□□□□□ -0.57
SCFD1-220ENST00000556486 CDHR1Q96JP9 859 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 TMEM87BQ96K49 555 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 NEK1Q96PY6 1258 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 TUBE1Q9UJT0 475 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 LRFN2Q9ULH4 789 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 MYO10Q9HD67 2058 aa11.46□□□□□ -0.57
SCFD1-220ENST00000556486 RIF1Q5UIP0 2472 aaKnown RBP11.46□□□□□ -0.58
SCFD1-220ENST00000556486 PROB1E7EW31 1015 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 ASGR2P07307 311 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 SCG2P13521 617 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 MRPS6P82932 125 aaKnown RBP11.45□□□□□ -0.58
SCFD1-220ENST00000556486 MARCH8Q5T0T0 291 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 TAF2Q6P1X5 1199 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 USP17L6PQ6QN14 398 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 RSPH3Q86UC2 560 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 NLRX1Q86UT6 975 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 NPAS4Q8IUM7 802 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 CRIPAKQ8N1N5 446 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 CUL5Q93034 780 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 NKD2Q969F2 451 aaPredicted RBP11.45□□□□□ -0.58
SCFD1-220ENST00000556486 OCSTAMPQ9BR26 566 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 IRF2BPLQ9H1B7 796 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 TMEM260Q9NX78 707 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 KIAA1522Q9P206 1035 aaPredicted RBP11.45□□□□□ -0.58
SCFD1-220ENST00000556486 SEC63Q9UGP8 760 aaKnown RBP11.45□□□□□ -0.58
SCFD1-220ENST00000556486 RBM8AQ9Y5S9 174 aaKnown RBP11.45□□□□□ -0.58
SCFD1-220ENST00000556486 FAM186AA6NE01 2351 aa11.45□□□□□ -0.58
SCFD1-220ENST00000556486 DNAH14Q0VDD8 3507 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 MED19A0JLT2 244 aaPredicted RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 MBLAC1A4D2B0 266 aaPredicted RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 TBKBP1A7MCY6 615 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 HIDE1A8MVS5 230 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 C2CD4DB7Z1M9 353 aa11.44□□□□□ -0.58
SCFD1-220ENST00000556486 SH2B2O14492 632 aaPredicted RBP11.44□□□□□ -0.58
SCFD1-220ENST00000556486 MAFGO15525 162 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms