RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NAALADL2Q58DX5 795 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 TJAP1Q5JTD0 557 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 FAM184AQ8NB25 1140 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 SLC7A3Q8WY07 619 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 SYMPKQ92797 1274 aaKnown RBP17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 C11orf84Q9BUA3 381 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 TRAIPQ9BWF2 469 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 LMAN2LQ9H0V9 348 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 TTC12Q9H892 705 aaPredicted RBP17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 TMEM161AQ9NX61 479 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 MTUS1Q9ULD2 1270 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 COG5Q9UP83 839 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 KIF3AQ9Y496 699 aa17.97■□□□□ 0.47
CCDC88C-209ENST00000554872 DENND3A2RUS2 1198 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 TMEM150BA6NC51 233 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 DLL1O00548 723 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 U2AF2P26368 475 aaKnown RBP eCLIP17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 YWHABP31946 246 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 BMPR1AP36894 532 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 DRP2Q13474 957 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 BTG3Q14201 252 aaPredicted RBP17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 CCDC85BQ15834 202 aaPredicted RBP17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 NCAPH2Q6IBW4 605 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 OTUD6AQ7L8S5 288 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 NOSTRINQ8IVI9 506 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 RSPH1Q8WYR4 309 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 P2RX5Q93086 422 aa17.96■□□□□ 0.47
CCDC88C-209ENST00000554872 ARID2Q68CP9 1835 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 TTC28Q96AY4 2481 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 SLITRK3O94933 977 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 MRPS5P82675 430 aaKnown RBP17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 AAK1Q2M2I8 961 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 TIGD5Q53EQ6 642 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 PLA2G4FQ68DD2 849 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 PPM1EQ8WY54 764 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 DYDC2Q96IM9 177 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 CEP170P1Q96L14 293 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 ASB2Q96Q27 587 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 EIF2AK1Q9BQI3 630 aaKnown RBP17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 COL25A1Q9BXS0 654 aaPredicted RBP17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 GCOM2Q9BZD3 368 aaPredicted RBP17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 INO80BQ9C086 356 aaPredicted RBP17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 PRDM6Q9NQX0 595 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 CHST12Q9NRB3 414 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 RGL1Q9NZL6 768 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 PCDHB7Q9Y5E2 793 aa17.95■□□□□ 0.46
CCDC88C-209ENST00000554872 HOXA2O43364 376 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 XRCC6P12956 609 aaKnown RBP eCLIP17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 CTNNB1P35222 781 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 FOSBP53539 338 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 GUCY1B3Q02153 619 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 GPM6BQ13491 265 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 COL19A1Q14993 1142 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 MICALL1Q8N3F8 863 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 NLRP7Q8WX94 980 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 PPP1R16BQ96T49 567 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 TMEM60Q9H2L4 133 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 ANKEF1Q9NU02 776 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 SUCLA2Q9P2R7 463 aaPredicted RBP17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 LRFN2Q9ULH4 789 aa17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 MRPL42Q9Y6G3 142 aaKnown RBP17.94■□□□□ 0.46
CCDC88C-209ENST00000554872 FNDC1Q4ZHG4 1894 aaPredicted RBP17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 SFPQP23246 707 aaKnown RBP eCLIP17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 POLGP54098 1239 aaPredicted RBP17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 NPEPPSP55786 919 aa17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 TCP11Q8WWU5 503 aa17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 PSPC1Q8WXF1 523 aaKnown RBP17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 TMX3Q96JJ7 454 aa17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 DACT1Q9NYF0 836 aa17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 MUC3AQ02505 3323 aa17.93■□□□□ 0.46
CCDC88C-209ENST00000554872 A0A0U1RQF3 1178 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 ASAP2O43150 1006 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 OR52Z1P0C646 297 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 ZSCAN20P17040 1043 aaPredicted RBP17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 MUTP22033 750 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 MCM7P33993 719 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 TXKP42681 527 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 CYP4A11Q02928 519 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 CTTNQ14247 550 aaKnown RBP17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 EMC2Q15006 297 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 PCBP1Q15365 356 aaKnown RBP eCLIP17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 RHPN2Q8IUC4 686 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 ZNF579Q8NAF0 562 aaKnown RBP17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 HLA-CQ95604 372 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 SCLT1Q96NL6 688 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 SH2D3AQ9BRG2 576 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 ATP6V0A4Q9HBG4 840 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 IFT122Q9HBG6 1241 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 TUFT1Q9NNX1 390 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 NOL7Q9UMY1 257 aaKnown RBP17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 COL4A3BPQ9Y5P4 624 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 KIAA1671Q9BY89 1806 aa17.92■□□□□ 0.46
CCDC88C-209ENST00000554872 A0A087WZ62 844 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 DGAT1O75907 488 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 CD2BP2O95400 341 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 EOMESO95936 686 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 POU5F1BQ06416 359 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 CSPP1Q1MSJ5 1256 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 TTC38Q5R3I4 469 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 SRGAP1Q7Z6B7 1085 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms