RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 SUPT20HL2P0C7V6 817 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 TRIM49P0CI25 452 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 TRIM49CP0CI26 452 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 OSBPP22059 807 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 EDNRBP24530 442 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 TERF1P54274 439 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 HAUS6Q7Z4H7 955 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 FRMD5Q7Z6J6 570 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 FBXO16Q8IX29 292 aaPredicted RBP13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 RETREG2Q8NC44 543 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 CDHR1Q96JP9 859 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 CBWD1Q9BRT8 395 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 ARHGAP20Q9P2F6 1191 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 PAXBP1Q9Y5B6 917 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 PLXNA1Q9UIW2 1896 aa13.98□□□□□ -0.17
VIPAS39-206ENST00000553888 EPB41P11171 864 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 XRCC5P13010 732 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ERVK-9P63128 1117 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ENOX2Q16206 610 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 TSR1Q2NL82 804 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 FIGNQ5HY92 759 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 FAM186BQ8IYM0 893 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ANKRD13CQ8N6S4 541 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 SLC35C1Q96A29 364 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 BORCS6Q96GS4 357 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 MMP19Q99542 508 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 XPNPEP1Q9NQW7 623 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ANKEF1Q9NU02 776 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 AJAP1Q9UKB5 411 aaPredicted RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ADGRA3Q8IWK6 1321 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ZC3H4Q9UPT8 1303 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 A0A1W2PQJ5 194 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 RCCD1A6NED2 376 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 VGLL3A8MV65 326 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 BTBD19C9JJ37 291 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 STAM2O75886 525 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 FARP2O94887 1054 aaPredicted RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ARHGAP25P42331 645 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 GJB7Q6PEY0 223 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 COPS5Q92905 334 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ATP6V0A1Q93050 837 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 MS4A4AQ96JQ5 239 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 PCYT2Q99447 389 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 PLXNB2O15031 1838 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 PDHXO00330 501 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ZNF263O14978 683 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 AFPP02771 609 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 RPL13P26373 211 aaKnown RBP13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ICAM3P32942 547 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 ARID5AQ03989 594 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 MIS18BP1Q6P0N0 1132 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 CACNA2D4Q7Z3S7 1137 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 RDM1Q8NG50 284 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 BRI3BPQ8WY22 251 aa13.97□□□□□ -0.17
VIPAS39-206ENST00000553888 CCL15-CCL14A0A0B4J2E2 113 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 GSTTP1A0A1W2PQM5 241 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 GGPS1O95749 300 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 NPTX2P47972 431 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 CCL15Q16663 113 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 DPY19L2P1Q6NXN4 242 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 PDXDC1Q6P996 788 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 HS2ST1Q7LGA3 356 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 TRIM50Q86XT4 487 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 ZNF397Q8NF99 534 aaPredicted RBP13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 CYP26B1Q9NR63 512 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 PDGFCQ9NRA1 345 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 IGSF9BQ9UPX0 1349 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 DOCK3Q8IZD9 2030 aa13.96□□□□□ -0.17
VIPAS39-206ENST00000553888 MYH10P35580 1976 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 GOLGA8IPA6NC78 632 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 GOLGA8JA6NMD2 632 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 TLR2O60603 784 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 CELF2O95319 508 aaKnown RBP13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 DLG4P78352 724 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 KCTD2Q14681 263 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 DRC1Q96MC2 740 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 ZNF302Q9NR11 478 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 DMAC2Q9NW81 257 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 ZNHIT6Q9NWK9 470 aaKnown RBP13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 FAM184BQ9ULE4 1060 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 PLAGL2Q9UPG8 496 aa13.96□□□□□ -0.18
VIPAS39-206ENST00000553888 ANKRD63C9JTQ0 380 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 EXOC3O60645 756 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 LRRN2O75325 713 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 URI1O94763 535 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 SLC25A27O95847 323 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 PNMA6AP0CW24 399 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 PSMC2P35998 433 aaKnown RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 EIF4A3P38919 411 aaKnown RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 GJC2Q5T442 439 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 TMEM143Q96AN5 459 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 GANQ9H2C0 597 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 NMRK2Q9NPI5 230 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 ZNF215Q9UL58 517 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 DUSP10Q9Y6W6 482 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 DNAJC25-GNG10A0A024R161 153 aa13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 KIF2AO00139 706 aaPredicted RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 SLC16A3O15427 465 aaKnown RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 TFRCP02786 760 aaKnown RBP13.95□□□□□ -0.18
VIPAS39-206ENST00000553888 PON1P27169 355 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms