RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 GMCL1P1Q8NEA9 526 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 SPATA4Q8NEY3 305 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 SLC30A5Q8TAD4 765 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 HSD17B14Q9BPX1 270 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 R3HDMLQ9H3Y0 253 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TYW1Q9NV66 732 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CEP72Q9P209 647 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 PCDHA2Q9Y5H9 948 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 NFKBIEO00221 500 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 EVI5O60447 810 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 DDNO94850 711 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 H2AFZP0C0S5 128 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 PPP1R2P41236 205 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 STAT1P42224 750 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 CARSP49589 748 aaKnown RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 VPS41P49754 854 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 USP14P54578 494 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 BIRC3Q13489 604 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 MESDQ14696 234 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 MEA1Q16626 185 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 TKFCQ3LXA3 575 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ZCWPW2Q504Y3 356 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ZNF394Q53GI3 561 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 DAB2IPQ5VWQ8 1189 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 C1orf186Q6ZWK4 172 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 H2AFVQ71UI9 128 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 PEX26Q7Z412 305 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 MAATS1Q7Z4T9 603 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ANKRD35Q8N283 1001 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 TAB3Q8N5C8 712 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 SH2D3CQ8N5H7 860 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 SLC35C1Q96A29 364 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 RUFY1Q96T51 708 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 FAM118BQ9BPY3 351 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 TLR10Q9BXR5 811 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 CELF4Q9BZC1 486 aaKnown RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 EHMT1Q9H9B1 1298 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 DNAJC17Q9NVM6 304 aaKnown RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 CTTNBP2NLQ9P2B4 639 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ANKFY1Q9P2R3 1169 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 FEM1BQ9UK73 627 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 SNX12Q9UMY4 172 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 NAV1Q8NEY1 1877 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 CCDC151A5D8V7 595 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 LRRIQ4A6NIV6 560 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ANKRD63C9JTQ0 380 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 HEXIM1O94992 359 aaKnown RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ITGA4P13612 1032 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 YWHABP31946 246 aaKnown RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ACOT2P49753 483 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 IGBP1P78318 339 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 Q4G0T1 1027 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ZNF720Q7Z2F6 126 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 HAUS6Q7Z4H7 955 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ZBTB33Q86T24 672 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 PASD1Q8IV76 773 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 TMEM130Q8N3G9 435 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 EHBP1Q8NDI1 1231 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 OR2W6PQ8NHA6 318 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 POMGNT1Q8WZA1 660 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 NAP1L4Q99733 375 aaKnown RBP6.09□□□□□ -1.43
LIMA1-215ENST00000552823 KIAA1551Q9HCM1 1747 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 AGPAT3Q9NRZ7 376 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 RNF19AQ9NV58 838 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 ADAM21Q9UKJ8 722 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 JRKLQ9Y4A0 524 aa6.09□□□□□ -1.43
LIMA1-215ENST00000552823 TLDC2A0PJX2 215 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 DENND3A2RUS2 1198 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 ZEB2O60315 1214 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 NR3C2P08235 984 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FAM153BP0C7A2 387 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 HPDP32754 393 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 GGCXP38435 758 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 QARSP47897 775 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 GALCP54803 685 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 MYL7Q01449 175 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CKAP4Q07065 602 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 BRD3Q15059 726 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 EPHA7Q15375 998 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FAM153CQ494X1 144 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 EAPPQ56P03 285 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CREG2Q8IUH2 290 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 ZBTB45Q96K62 511 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 GMLQ99445 158 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 LARSQ9P2J5 1176 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FAM153AQ9UHL3 310 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 RSPH14Q9UHP6 348 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 PLIN4Q96Q06 1357 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CYP3A7-CYP3A51PA0A087WV96 503 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 HNRNPDLO14979 420 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CYP26A1O43174 497 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CCNE2O96020 404 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 PGK2P07205 417 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 TNNI1P19237 187 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CYP3A7P24462 503 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FMO5P49326 533 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 PPP3CAQ08209 521 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 SPOPLQ6IQ16 392 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FOXR1Q6PIV2 292 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 VPS36Q86VN1 386 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms