RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PLCD3Q8N3E9 789 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 NLRP4Q96MN2 994 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 RUSC1Q9BVN2 902 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 RIOX1Q9H6W3 641 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 CNOT8Q9UFF9 292 aaKnown RBP16.91■□□□□ 0.3
CUX1-211ENST00000546411 DMGDHQ9UI17 866 aaKnown RBP16.91■□□□□ 0.3
CUX1-211ENST00000546411 HERC5Q9UII4 1024 aaKnown RBP16.91■□□□□ 0.3
CUX1-211ENST00000546411 NOC2LQ9Y3T9 749 aaKnown RBP16.91■□□□□ 0.3
CUX1-211ENST00000546411 HHATQ5VTY9 493 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 PLA2G4FQ68DD2 849 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 SH3RF1Q7Z6J0 888 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 WHAMMQ8TF30 809 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 DNAJC7Q99615 494 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 STK38LQ9Y2H1 464 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 ZNF233A6NK53 670 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 WDR64B1ANS9 1081 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 ZBTB22O15209 634 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 SART1O43290 800 aaKnown RBP16.91■□□□□ 0.3
CUX1-211ENST00000546411 CASC4Q6P4E1 433 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 CCNI2Q6ZMN8 369 aaPredicted RBP16.91■□□□□ 0.3
CUX1-211ENST00000546411 FRMD5Q7Z6J6 570 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 PLCB1Q9NQ66 1216 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 NRBP2Q9NSY0 501 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 TXNDC16Q9P2K2 825 aa16.91■□□□□ 0.3
CUX1-211ENST00000546411 CACNA1FO60840 1977 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 COPB2P35606 906 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 YARSP54577 528 aaKnown RBP16.9■□□□□ 0.3
CUX1-211ENST00000546411 BFSP1Q12934 665 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 ALS2CLQ60I27 953 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 CCDC13Q8IYE1 715 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 PSMD1Q99460 953 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 MLXIPLQ9NP71 852 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 HOMER3Q9NSC5 361 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.9■□□□□ 0.3
CUX1-211ENST00000546411 FAM237AA0A1B0GTK4 181 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 MYO1CO00159 1063 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 CYP26A1O43174 497 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 ECEL1O95672 775 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 CCND2P30279 289 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 ZNF772Q68DY9 489 aaPredicted RBP16.9■□□□□ 0.3
CUX1-211ENST00000546411 SLC30A5Q8TAD4 765 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 RSAD2Q8WXG1 361 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 APOL6Q9BWW8 343 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 FEM1BQ9UK73 627 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 SSU72P8A0A1W2PR75 194 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 RNF225M0QZC1 329 aaPredicted RBP16.9■□□□□ 0.3
CUX1-211ENST00000546411 SHMT1P34896 483 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 HMGCS2P54868 508 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 MKRN3Q13064 507 aaKnown RBP16.9■□□□□ 0.3
CUX1-211ENST00000546411 DALRD3Q5D0E6 543 aaKnown RBP16.9■□□□□ 0.3
CUX1-211ENST00000546411 OR2W6PQ8NHA6 318 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 PNMA5Q96PV4 448 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 C11orf70Q9BRQ4 267 aa16.9■□□□□ 0.3
CUX1-211ENST00000546411 FMN2Q9NZ56 1722 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 DDR1Q08345 913 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 MTMR2Q13614 643 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 KCTD19Q17RG1 926 aaPredicted RBP16.89■□□□□ 0.29
CUX1-211ENST00000546411 SOX5P35711 763 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 HP1BP3Q5SSJ5 553 aaPredicted RBP16.89■□□□□ 0.29
CUX1-211ENST00000546411 SESTD1Q86VW0 696 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 KIFC3Q9BVG8 833 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 SYNJ2BP-COX16A0A087WUM0 186 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 EPHA7Q15375 998 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 CLUL1Q15846 466 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 BEND6Q5SZJ8 279 aaPredicted RBP16.89■□□□□ 0.29
CUX1-211ENST00000546411 NEK9Q8TD19 979 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 MSTO1Q9BUK6 570 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 BLOC1S4Q9NUP1 217 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 COX16Q9P0S2 106 aa16.89■□□□□ 0.29
CUX1-211ENST00000546411 TNNC2P02585 160 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 SEMA3FQ13275 785 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 EPC2Q52LR7 807 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 TMEM270Q6UE05 265 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.88■□□□□ 0.29
CUX1-211ENST00000546411 ZNF70Q9UC06 446 aaPredicted RBP16.88■□□□□ 0.29
CUX1-211ENST00000546411 TTLL3Q9Y4R7 772 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 LRRD1A4D1F6 860 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 ATMINO43313 823 aaPredicted RBP16.88■□□□□ 0.29
CUX1-211ENST00000546411 PSAPP07602 524 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 FMO5P49326 533 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 GUCY1A3Q02108 690 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 BAATQ14032 418 aaPredicted RBP16.88■□□□□ 0.29
CUX1-211ENST00000546411 SCFD1Q8WVM8 642 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 MAIP1Q8WWC4 291 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 EDEM3Q9BZQ6 932 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 LRRC4BQ9NT99 713 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 CCDC188H7C350 402 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 SGK1O00141 431 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 ZBTB39O15060 712 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 TTI1O43156 1089 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 SMARCA1P28370 1054 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 GPC5P78333 572 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 MIS18BP1Q6P0N0 1132 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 RHOT2Q8IXI1 618 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 PIM2Q9P1W9 311 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 ADAMTS3O15072 1205 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 STAM2O75886 525 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 IL1R1P14778 569 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 RHBDL3P58872 404 aa16.88■□□□□ 0.29
CUX1-211ENST00000546411 BPIFB4P59827 614 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms