RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 TUBP50607 506 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 NLRP5P59047 1200 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 DRP2Q13474 957 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 ZNF554Q86TJ5 538 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 DPF2Q92785 391 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 EIF2AQ9BY44 585 aaKnown RBP12.02□□□□□ -0.48
CDH3-203ENST00000542274 TUBE1Q9UJT0 475 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 KIAA1257Q9ULG3 409 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 HEY1Q9Y5J3 304 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 COL4A5P29400 1685 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 FAM237AA0A1B0GTK4 181 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 YDJCA8MPS7 323 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 MTTPP55157 894 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 EIF6P56537 245 aaKnown RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 MDM2Q00987 491 aaPredicted RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 ADAM9Q13443 819 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 SARM1Q6SZW1 724 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 TRMT44Q8IYL2 757 aaKnown RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 DHX58Q96C10 678 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 TMEM47Q9BQJ4 181 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 DDX4Q9NQI0 724 aaKnown RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 CIDEBQ9UHD4 219 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 MAD2L2Q9UI95 211 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 FOCADQ5VW36 1801 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 TRIM75PA6NK02 468 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 PCP11498 1178 aaKnown RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 MCM7P33993 719 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 AFMP43652 599 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 CD97P48960 835 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 CDK8P49336 464 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 FAM209AQ5JX71 171 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 PODNQ7Z5L7 613 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 ZNF444Q8N0Y2 327 aaPredicted RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 LRRC45Q96CN5 670 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 CLMNQ96JQ2 1002 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 FNBP1Q96RU3 617 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 IGSF5Q9NSI5 407 aa12.02□□□□□ -0.49
CDH3-203ENST00000542274 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 NOP53Q9NZM5 478 aaKnown RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 SRPRBQ9Y5M8 271 aaKnown RBP12.02□□□□□ -0.49
CDH3-203ENST00000542274 KIF13BQ9NQT8 1826 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 VWA3AA6NCI4 1184 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 TTC34A8MYJ7 566 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 HNRNPRO43390 633 aaKnown RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 TBC1D12O60347 775 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 COBLO75128 1261 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 GSTT2P0CG29 244 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 GSTT2BP0CG30 244 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 CALM1P0DP23 149 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 CALM2P0DP24 149 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 CALM3P0DP25 149 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 AARSP49588 968 aaKnown RBP eCLIP12.01□□□□□ -0.49
CDH3-203ENST00000542274 GOLGA8FQ08AF8 430 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 GOLGA8DPQ0D2H9 430 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 BIRC3Q13489 604 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 DDX60LQ5H9U9 1706 aaKnown RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 DACT2Q5SW24 774 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 NEPROQ6NW34 567 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 CRELD2Q6UXH1 353 aaPredicted RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 SRGAP1Q7Z6B7 1085 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 LINC00469Q8N7U9 141 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 ANKZF1Q9H8Y5 726 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 PFDN4Q9NQP4 134 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 USP40Q9NVE5 1235 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 RAB21Q9UL25 225 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 TMA7Q9Y2S6 64 aaKnown RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 A0A0B4J203 849 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 FAM25EA8MYX2 175 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 SPTLC1O15269 473 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 TACC1O75410 805 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 RAD17O75943 681 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 FBXO21O94952 628 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 VIMP08670 466 aaKnown RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 KIF5BP33176 963 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 BNIP1Q12981 228 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 PTGDRQ13258 359 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 IL17AQ16552 155 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 PFKFB3Q16875 520 aaPredicted RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 TRIM65Q6PJ69 517 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 USP17L2Q6R6M4 530 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 FIP1L1Q6UN15 594 aaKnown RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 TEX9Q8N6V9 391 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 WDR60Q8WVS4 1066 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 SYMPKQ92797 1274 aaKnown RBP12.01□□□□□ -0.49
CDH3-203ENST00000542274 ASIC4Q96FT7 647 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 RPGRIP1Q96KN7 1286 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 PNKPQ96T60 521 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 MAN1B1Q9UKM7 699 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 CHMP2BQ9UQN3 213 aa12.01□□□□□ -0.49
CDH3-203ENST00000542274 ITIH6Q6UXX5 1313 aa12□□□□□ -0.49
CDH3-203ENST00000542274 ACTN4O43707 911 aaKnown RBP12□□□□□ -0.49
CDH3-203ENST00000542274 UBL4AP11441 157 aa12□□□□□ -0.49
CDH3-203ENST00000542274 CRKP46108 304 aa12□□□□□ -0.49
CDH3-203ENST00000542274 GEMIN4P57678 1058 aaKnown RBP12□□□□□ -0.49
CDH3-203ENST00000542274 IGBP1P78318 339 aa12□□□□□ -0.49
CDH3-203ENST00000542274 FMR1Q06787 632 aaKnown RBP eCLIP12□□□□□ -0.49
CDH3-203ENST00000542274 NFIAQ12857 509 aa12□□□□□ -0.49
CDH3-203ENST00000542274 MSLNQ13421 630 aaPredicted RBP12□□□□□ -0.49
CDH3-203ENST00000542274 TTC38Q5R3I4 469 aa12□□□□□ -0.49
CDH3-203ENST00000542274 GRAMD4Q6IC98 578 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms