RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 NKRFO15226 690 aaKnown RBP eCLIP15.33■□□□□ 0.04
COLCA1-204ENST00000540738 GFPT2O94808 682 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 RUFY4Q6ZNE9 571 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 HAUS6Q7Z4H7 955 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 CDKL2Q92772 493 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 MRRFQ96E11 262 aaKnown RBP15.33■□□□□ 0.04
COLCA1-204ENST00000540738 STRNO43815 780 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 GAS2O43903 313 aaKnown RBP15.33■□□□□ 0.04
COLCA1-204ENST00000540738 TADA2AO75478 443 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 AGBL1Q96MI9 1066 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 MOV10L1Q9BXT6 1211 aaKnown RBP15.33■□□□□ 0.04
COLCA1-204ENST00000540738 CPA4Q9UI42 421 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 PPATQ06203 517 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 NFIAQ12857 509 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 STAP1Q9ULZ2 295 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 TMX2Q9Y320 296 aa15.33■□□□□ 0.04
COLCA1-204ENST00000540738 PDHXO00330 501 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 JMJD4Q9H9V9 463 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 RBAKQ9NYW8 714 aaPredicted RBP15.32■□□□□ 0.04
COLCA1-204ENST00000540738 MCF2LO15068 1137 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 SART1O43290 800 aaKnown RBP15.32■□□□□ 0.04
COLCA1-204ENST00000540738 HOXC6P09630 235 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 RPS6P62753 249 aaKnown RBP15.32■□□□□ 0.04
COLCA1-204ENST00000540738 KAZNQ674X7 775 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 DPF3Q92784 378 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 CDCA5Q96FF9 252 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 PLCD4Q9BRC7 762 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 RTFDC1Q9BY42 306 aaPredicted RBP15.32■□□□□ 0.04
COLCA1-204ENST00000540738 PPP1R9AQ9ULJ8 1098 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 FARP1Q9Y4F1 1045 aaPredicted RBP15.32■□□□□ 0.04
COLCA1-204ENST00000540738 DISP2A7MBM2 1401 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 HIP1RO75146 1068 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 EXOSC10Q01780 885 aaKnown RBP15.32■□□□□ 0.04
COLCA1-204ENST00000540738 PPP2R5CQ13362 524 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 SETDB1Q15047 1291 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 NAALADL2Q58DX5 795 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 EPB41L4AQ9HCS5 686 aaPredicted RBP15.32■□□□□ 0.04
COLCA1-204ENST00000540738 ITGA4P13612 1032 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 FGFR2P21802 821 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 INPP5BP32019 993 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 KRT17Q04695 432 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 PKP1Q13835 747 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 FYB2Q5VWT5 728 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 HDXQ7Z353 690 aa15.32■□□□□ 0.04
COLCA1-204ENST00000540738 WNT10BO00744 389 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 HOXA2O43364 376 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 KRT15P19012 456 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 ENOSF1Q7L5Y1 443 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 VPS52Q8N1B4 723 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 IGDCC4Q8TDY8 1250 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 BUB1O43683 1085 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 VIMP08670 466 aaKnown RBP15.31■□□□□ 0.04
COLCA1-204ENST00000540738 RALAP11233 206 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 ZBED6P86452 979 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 PRMT7Q9NVM4 692 aaPredicted RBP15.31■□□□□ 0.04
COLCA1-204ENST00000540738 SYNGAP1Q96PV0 1343 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 DEFB115Q30KQ5 88 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 ZNF668Q96K58 619 aaPredicted RBP15.31■□□□□ 0.04
COLCA1-204ENST00000540738 DDX50Q9BQ39 737 aaKnown RBP15.31■□□□□ 0.04
COLCA1-204ENST00000540738 PLCB1Q9NQ66 1216 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 UPP2O95045 317 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 KRT1P04264 644 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 GARSP41250 739 aaKnown RBP15.31■□□□□ 0.04
COLCA1-204ENST00000540738 ATP2C1P98194 919 aaPredicted RBP15.31■□□□□ 0.04
COLCA1-204ENST00000540738 TEX2Q8IWB9 1127 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 SKA2Q8WVK7 121 aaPredicted RBP15.31■□□□□ 0.04
COLCA1-204ENST00000540738 GMCL1Q96IK5 515 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 HPCAL4Q9UM19 191 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 PXDNQ92626 1479 aa15.31■□□□□ 0.04
COLCA1-204ENST00000540738 PPARGP37231 505 aaPredicted RBP15.3■□□□□ 0.04
COLCA1-204ENST00000540738 VAMP7P51809 220 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 FKBP1BP68106 108 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 KRT39Q6A163 491 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 KCTD6Q8NC69 237 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 GMCL1P1Q8NEA9 526 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 PRPF31Q8WWY3 499 aaKnown RBP15.3■□□□□ 0.04
COLCA1-204ENST00000540738 A8MXQ7 604 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 ATF2P15336 505 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 CPLX4Q7Z7G2 160 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 AFG1LQ8WV93 481 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 PASKQ96RG2 1323 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 SERPING1P05155 500 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 PRKCEQ02156 737 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 EMC2Q15006 297 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 KIAA1683Q9H0B3 1180 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 GPRC5DQ9NZD1 345 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 CD4P01730 458 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 CASP14P31944 242 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 COG7P83436 770 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 NOGQ13253 232 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 WHAMMP3Q1A5X7 153 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 DACT2Q5SW24 774 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 HHATQ5VTY9 493 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 POTEAQ6S8J7 498 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 FAM133AQ8N9E0 248 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 ACER1Q8TDN7 264 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 ZC3H15Q8WU90 426 aaKnown RBP15.3■□□□□ 0.04
COLCA1-204ENST00000540738 PCDHB7Q9Y5E2 793 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 FAM170AA1A519 330 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 CALB1P05937 261 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms