RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 POLGP54098 1239 aaPredicted RBP23.38■■□□□ 1.33
VPS28-203ENST00000524521 XKR9Q5GH70 373 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 TTC38Q5R3I4 469 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 SLC24A5Q71RS6 500 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 RHPN2Q8IUC4 686 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 EXOC8Q8IYI6 725 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 SLC7A3Q8WY07 619 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 HSD17B14Q9BPX1 270 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 GCOM2Q9BZD3 368 aaPredicted RBP23.38■■□□□ 1.33
VPS28-203ENST00000524521 C1orf112Q9NSG2 853 aa23.38■■□□□ 1.33
VPS28-203ENST00000524521 PRRC2BQ5JSZ5 2229 aaKnown RBP23.37■■□□□ 1.33
VPS28-203ENST00000524521 A0A087WZ62 844 aa23.37■■□□□ 1.33
VPS28-203ENST00000524521 CSDE1O75534 798 aaKnown RBP23.37■■□□□ 1.33
VPS28-203ENST00000524521 FGFR4P22455 802 aa23.37■■□□□ 1.33
VPS28-203ENST00000524521 U2AF2P26368 475 aaKnown RBP eCLIP23.37■■□□□ 1.33
VPS28-203ENST00000524521 SKIV2LQ15477 1246 aaKnown RBP23.37■■□□□ 1.33
VPS28-203ENST00000524521 FDXACB1Q9BRP7 624 aaPredicted RBP23.37■■□□□ 1.33
VPS28-203ENST00000524521 BACH2Q9BYV9 841 aa23.37■■□□□ 1.33
VPS28-203ENST00000524521 RC3H2Q9HBD1 1191 aaKnown RBP23.37■■□□□ 1.33
VPS28-203ENST00000524521 BMP2KQ9NSY1 1161 aaPredicted RBP23.37■■□□□ 1.33
VPS28-203ENST00000524521 LMCD1Q9NZU5 365 aa23.37■■□□□ 1.33
VPS28-203ENST00000524521 CHD7Q9P2D1 2997 aa23.37■■□□□ 1.33
VPS28-203ENST00000524521 PPME1Q9Y570 386 aa23.37■■□□□ 1.33
VPS28-203ENST00000524521 POTEMA6NI47 508 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 C9IYK1 514 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 ZSCAN20P17040 1043 aaPredicted RBP23.36■■□□□ 1.33
VPS28-203ENST00000524521 GJB2P29033 226 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 RFC5P40937 340 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 TECP42680 631 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 TRAPPC10P48553 1259 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 ORC2Q13416 577 aaPredicted RBP23.36■■□□□ 1.33
VPS28-203ENST00000524521 GPM6BQ13491 265 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 DSC3Q14574 896 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 PAN2Q504Q3 1202 aaKnown RBP23.36■■□□□ 1.33
VPS28-203ENST00000524521 MCTP1Q6DN14 999 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 KSR1Q8IVT5 923 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 NEK9Q8TD19 979 aa23.36■■□□□ 1.33
VPS28-203ENST00000524521 DHX33Q9H6R0 707 aaKnown RBP23.36■■□□□ 1.33
VPS28-203ENST00000524521 RNF216Q9NWF9 866 aaPredicted RBP23.36■■□□□ 1.33
VPS28-203ENST00000524521 OR52Z1P0C646 297 aa23.35■■□□□ 1.33
VPS28-203ENST00000524521 CTNNB1P35222 781 aa23.35■■□□□ 1.33
VPS28-203ENST00000524521 NBR1Q14596 966 aa23.35■■□□□ 1.33
VPS28-203ENST00000524521 TMEM143Q96AN5 459 aa23.35■■□□□ 1.33
VPS28-203ENST00000524521 NLRP4Q96MN2 994 aa23.35■■□□□ 1.33
VPS28-203ENST00000524521 SMC3Q9UQE7 1217 aa23.35■■□□□ 1.33
VPS28-203ENST00000524521 H3BNC9 293 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 LYPLA2O95372 231 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 BMPR1AP36894 532 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 GATMP50440 423 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 FAM189BP81408 668 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 ZNF410Q86VK4 478 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 CMTR2Q8IYT2 770 aaKnown RBP23.34■■□□□ 1.33
VPS28-203ENST00000524521 PRPF31Q8WWY3 499 aaKnown RBP23.34■■□□□ 1.33
VPS28-203ENST00000524521 INO80BQ9C086 356 aaPredicted RBP23.34■■□□□ 1.33
VPS28-203ENST00000524521 RWDD3Q9Y3V2 267 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 COL4A4P53420 1690 aaPredicted RBP23.34■■□□□ 1.33
VPS28-203ENST00000524521 COL4A6Q14031 1691 aa23.34■■□□□ 1.33
VPS28-203ENST00000524521 A0A087WWV3 80 aa23.33■■□□□ 1.33
VPS28-203ENST00000524521 H3BQV1 296 aa23.33■■□□□ 1.33
VPS28-203ENST00000524521 EMC2Q15006 297 aa23.33■■□□□ 1.33
VPS28-203ENST00000524521 PIGOQ8TEQ8 1089 aa23.33■■□□□ 1.33
VPS28-203ENST00000524521 PSPC1Q8WXF1 523 aaKnown RBP23.33■■□□□ 1.33
VPS28-203ENST00000524521 CLP1Q92989 425 aaKnown RBP23.33■■□□□ 1.33
VPS28-203ENST00000524521 CCDC43Q96MW1 224 aaKnown RBP23.33■■□□□ 1.33
VPS28-203ENST00000524521 ATP6V0A4Q9HBG4 840 aa23.33■■□□□ 1.33
VPS28-203ENST00000524521 ANKEF1Q9NU02 776 aa23.33■■□□□ 1.33
VPS28-203ENST00000524521 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.33■■□□□ 1.33
VPS28-203ENST00000524521 COL4A3BPQ9Y5P4 624 aa23.33■■□□□ 1.33
VPS28-203ENST00000524521 MRPL42Q9Y6G3 142 aaKnown RBP23.33■■□□□ 1.33
VPS28-203ENST00000524521 DLL1O00548 723 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 RB1P06400 928 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 LINC00271P0C7V0 271 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 SRGAP2CP0DJJ0 459 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 SPATA31C1P0DKV0 1188 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 TOB1P50616 345 aaPredicted RBP23.32■■□□□ 1.32
VPS28-203ENST00000524521 FAM102BQ5T8I3 360 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 C4orf32Q8N8J7 132 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 TCP11Q8WWU5 503 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 MTRQ99707 1265 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 TMEM161AQ9NX61 479 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 THEGQ9P2T0 379 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 PCDHB6Q9Y5E3 794 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 GTF3C3Q9Y5Q9 886 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 NLRC5Q86WI3 1866 aa23.32■■□□□ 1.32
VPS28-203ENST00000524521 TBKBP1A7MCY6 615 aa23.31■■□□□ 1.32
VPS28-203ENST00000524521 GAS2O43903 313 aaKnown RBP23.31■■□□□ 1.32
VPS28-203ENST00000524521 SFPQP23246 707 aaKnown RBP eCLIP23.31■■□□□ 1.32
VPS28-203ENST00000524521 LAMTOR4Q0VGL1 99 aa23.31■■□□□ 1.32
VPS28-203ENST00000524521 PTPROQ16827 1216 aa23.31■■□□□ 1.32
VPS28-203ENST00000524521 CATSPER3Q86XQ3 398 aa23.31■■□□□ 1.32
VPS28-203ENST00000524521 ERMNQ8TAM6 284 aa23.31■■□□□ 1.32
VPS28-203ENST00000524521 ELAC1Q9H777 363 aaKnown RBP23.31■■□□□ 1.32
VPS28-203ENST00000524521 TUFT1Q9NNX1 390 aa23.31■■□□□ 1.32
VPS28-203ENST00000524521 C5orf67F2Z3F1 127 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 ASAP2O43150 1006 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 MED24O75448 989 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 FGFR1P11362 822 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 XRCC6P12956 609 aaKnown RBP eCLIP23.3■■□□□ 1.32
VPS28-203ENST00000524521 PTGDRQ13258 359 aa23.3■■□□□ 1.32
VPS28-203ENST00000524521 CATSPER4Q7RTX7 472 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms