RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	G3BP2	Q9UN86	482 aa	Known RBP	5.72	□□□□□ -1.49
PCM1-223	ENST00000524356	CUL7	Q14999	1698 aa		5.72	□□□□□ -1.49
PCM1-223	ENST00000524356	TEX14	Q8IWB6	1497 aa		5.71	□□□□□ -1.49
PCM1-223	ENST00000524356	KIF21B	O75037	1637 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	BIVM-ERCC5	R4GMW8	1640 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	DNAJC6	O75061	913 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	IL13RA1	P78552	427 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	DBP	Q10586	325 aa	Predicted RBP	5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	EIF4H	Q15056	248 aa	Known RBP	5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	HABP4	Q5JVS0	413 aa	Known RBP	5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	RHOU	Q7L0Q8	258 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	SHCBP1	Q8NEM2	672 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	HAS1	Q92839	578 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	PMM1	Q92871	262 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	RNPC3	Q96LT9	517 aa	Known RBP	5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	MLST8	Q9BVC4	326 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	OR10A2	Q9H208	303 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	SYNPO2L	Q9H987	977 aa		5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	DDX56	Q9NY93	547 aa	Known RBP	5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	MAGEC2	Q9UBF1	373 aa	Predicted RBP	5.71	□□□□□ -1.5
PCM1-223	ENST00000524356	MAGI3	Q5TCQ9	1506 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	ADAMTSL3	P82987	1691 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	GRID2IP	A4D2P6	1211 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	SLC26A4	O43511	780 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	S100B	P04271	92 aa	Predicted RBP	5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	CDK4	P11802	303 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	CD38	P28907	300 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	MRE11	P49959	708 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	PAK2	Q13177	524 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	NCAPH	Q15003	741 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	TRIM68	Q6AZZ1	485 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	SPC25	Q9HBM1	224 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	CDC42EP3	Q9UKI2	254 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	WDR7	Q9Y4E6	1490 aa		5.7	□□□□□ -1.5
PCM1-223	ENST00000524356	PCF11	O94913	1555 aa	Known RBP	5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	AMPD3	Q01432	767 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	PLEKHG4	Q58EX7	1191 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	KCTD1	Q719H9	257 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	VPS37D	Q86XT2	251 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	CKAP2L	Q8IYA6	745 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	CCDC146	Q8IYE0	955 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	MPHOSPH9	Q99550	1183 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	DSE	Q9UL01	958 aa		5.69	□□□□□ -1.5
PCM1-223	ENST00000524356	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	TRAF5	O00463	557 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	FAM20B	O75063	409 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	CAPNS1	P04632	268 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	TBX4	P57082	545 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	SAFB2	Q14151	953 aa	Known RBP eCLIP	5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	NBPF6	Q5VWK0	638 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	ANKRD35	Q8N283	1001 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	LENG9	Q96B70	501 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	NBPF4	Q96M43	638 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	GPR27	Q9NS67	375 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	FBXO10	Q9UK96	956 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	NUB1	Q9Y5A7	615 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	ARAP3	Q8WWN8	1544 aa		5.68	□□□□□ -1.5
PCM1-223	ENST00000524356	ZCCHC11	Q5TAX3	1644 aa	Known RBP	5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	PMS2P1	A4D2B8	440 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	CLK3	P49761	638 aa	Known RBP	5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	RIN1	Q13671	783 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	CNGB1	Q14028	1251 aa	Predicted RBP	5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	SV2C	Q496J9	727 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	OLFML1	Q6UWY5	402 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	SMC5	Q8IY18	1101 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	SLC25A43	Q8WUT9	341 aa	Predicted RBP	5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	EVI5L	Q96CN4	794 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	GPRASP2	Q96D09	838 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	KCNJ15	Q99712	375 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	PRDM13	Q9H4Q3	707 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	ZNF408	Q9H9D4	720 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	LRP2BP	Q9P2M1	347 aa		5.67	□□□□□ -1.5
PCM1-223	ENST00000524356	KIF27	Q86VH2	1401 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	PROB1	E7EW31	1015 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	GNAT1	P11488	350 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	GRK2	P25098	689 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	GRK3	P35626	688 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	KRTAP10-6	P60371	365 aa	Predicted RBP	5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	SPIRE1	Q08AE8	756 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	FMNL3	Q8IVF7	1028 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	JDP2	Q8WYK2	163 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	MKL1	Q969V6	931 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	SRPK1	Q96SB4	655 aa	Known RBP	5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	CD244	Q9BZW8	370 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	KANSL2	Q9H9L4	492 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	SNTG2	Q9NY99	539 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	PRKAB1	Q9Y478	270 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	MADD	Q8WXG6	1647 aa		5.66	□□□□□ -1.5
PCM1-223	ENST00000524356	KIAA0355	O15063	1070 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	PDGFRB	P09619	1106 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	GRIA2	P42262	883 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	MAN2A2	P49641	1150 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	RASA3	Q14644	834 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	STIL	Q15468	1287 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	STRIP1	Q5VSL9	837 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	CXXC5	Q7LFL8	322 aa	Known RBP	5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	RASGRP4	Q8TDF6	673 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	R3HDML	Q9H3Y0	253 aa		5.65	□□□□□ -1.5
PCM1-223	ENST00000524356	ATP10B	O94823	1461 aa		5.64	□□□□□ -1.51

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