RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 CAGE1Q8TC20 777 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 BAP1Q92560 729 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 EEF2KMTQ96G04 330 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 ALS2CR12Q96Q35 445 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 KCNH7Q9NS40 1196 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 ADAM21Q9UKJ8 722 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 SNX12Q9UMY4 172 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 COL4A3BPQ9Y5P4 624 aa17.61■□□□□ 0.41
SQSTM1-213ENST00000510187 LCTP09848 1927 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 STAM2O75886 525 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 MARSP56192 900 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 CYP27A1Q02318 531 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 STXBP2Q15833 593 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 FAM26FQ5R3K3 315 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 KCNK18Q7Z418 384 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 NEK11Q8NG66 645 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 MPHOSPH6Q99547 160 aaKnown RBP17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 NUDT12Q9BQG2 462 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 ZNF577Q9BSK1 485 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 DEF6Q9H4E7 631 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 MMRN2Q9H8L6 949 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 FAM207AQ9NSI2 230 aaPredicted RBP17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 TFR2Q9UP52 801 aa17.6■□□□□ 0.41
SQSTM1-213ENST00000510187 EIF4A3P38919 411 aaKnown RBP17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 GRB14Q14449 540 aa17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 NLRX1Q86UT6 975 aa17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 CCDC65Q8IXS2 484 aa17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 MMGT1Q8N4V1 131 aa17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 FGD4Q96M96 766 aa17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 PANK4Q9NVE7 773 aa17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 CEP72Q9P209 647 aa17.59■□□□□ 0.41
SQSTM1-213ENST00000510187 MACROD2A1Z1Q3 448 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 LRRC53A6NM62 1247 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 RBAK-RBAKDNI3L0D1 243 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 IPO5O00410 1097 aaKnown RBP17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 EPHB6O15197 1021 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 AKR1B10O60218 316 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 SRGAP2O75044 1071 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 TCP1P17987 556 aaKnown RBP17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 EDNRBP24530 442 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 LRCH2Q5VUJ6 765 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 DPP9Q86TI2 863 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 ZC3H3Q8IXZ2 948 aaKnown RBP17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 SLC5A5Q92911 643 aa17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 INPP4AQ96PE3 977 aaPredicted RBP17.58■□□□□ 0.41
SQSTM1-213ENST00000510187 SLC15A5A6NIM6 579 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 NKRFO15226 690 aaKnown RBP eCLIP17.58■□□□□ 0.44e-8■□□□□ 9.4
SQSTM1-213ENST00000510187 ECM1Q16610 540 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 ASTE1Q2TB18 679 aaPredicted RBP17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 ZNF792Q3KQV3 632 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 GNPTABQ3T906 1256 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 PPP4R3CPQ6ZMV5 832 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 RRAGAQ7L523 313 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 RNF10Q8N5U6 811 aaKnown RBP17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 GPRASP2Q96D09 838 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 CAPZA3Q96KX2 299 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 SUGCTQ9HAC7 445 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 AGO4Q9HCK5 861 aaKnown RBP17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 PKD2L1Q9P0L9 805 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 VPS18Q9P253 973 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 TSKSQ9UJT2 592 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 HYOU1Q9Y4L1 999 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 STK24Q9Y6E0 443 aa17.58■□□□□ 0.4
SQSTM1-213ENST00000510187 PLXNB2O15031 1838 aa17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 LRRIQ3A6PVS8 624 aaPredicted RBP17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 MAFGO15525 162 aa17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 GAS7O60861 476 aa17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 RGS20O76081 388 aa17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 PLEKP08567 350 aaPredicted RBP17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 CACNA2D4Q7Z3S7 1137 aa17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 LUC7LQ9NQ29 371 aaKnown RBP17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 FAM184BQ9ULE4 1060 aa17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 DUSP10Q9Y6W6 482 aa17.57■□□□□ 0.4
SQSTM1-213ENST00000510187 LOC102724159A0A0B4J2E5 919 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 FRMD3A2A2Y4 597 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 TRPA1O75762 1119 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 PSMD10O75832 226 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 PWP2Q15269 919 aaKnown RBP17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 CCDC40Q4G0X9 1142 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 CREG2Q8IUH2 290 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 GOLGA5Q8TBA6 731 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 CDHR1Q96JP9 859 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 RIT2Q99578 217 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 VAV3Q9UKW4 847 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 PCDHA2Q9Y5H9 948 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 CAPN6Q9Y6Q1 641 aa17.56■□□□□ 0.4
SQSTM1-213ENST00000510187 ASB14A6NK59 587 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 PDE2AO00408 941 aaPredicted RBP17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 TNPO2O14787 897 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 SERPING1P05155 500 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 PLA2G4BP0C869 781 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 MAGEA1P43355 309 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 HNRNPH2P55795 449 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 SPIRE1Q08AE8 756 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 EDRF1Q3B7T1 1238 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 MORN1Q5T089 497 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 SEPT14Q6ZU15 432 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 EEPD1Q7L9B9 569 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 OTOP1Q7RTM1 612 aa17.55■□□□□ 0.4
SQSTM1-213ENST00000510187 TRIM59Q8IWR1 403 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms