RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 NBPF20Q3BBV1 942 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 KMT5BQ4FZB7 885 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 ZNF658Q5TYW1 1059 aaPredicted RBP7.98□□□□□ -1.13
NUP54-204ENST00000506098 IER5Q5VY09 327 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 NFRKBQ6P4R8 1299 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 MTHFD1LQ6UB35 978 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 CXCL17Q6UXB2 119 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 ANKLE1Q8NAG6 615 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 SLC43A3Q8NBI5 491 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 SLC7A3Q8WY07 619 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 KIFAP3Q92845 792 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 CCDC47Q96A33 483 aaKnown RBP7.98□□□□□ -1.13
NUP54-204ENST00000506098 DRC1Q96MC2 740 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 DEFB118Q96PH6 123 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 FIZ1Q96SL8 496 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 SH2D3AQ9BRG2 576 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 NTPCRQ9BSD7 190 aaKnown RBP7.98□□□□□ -1.13
NUP54-204ENST00000506098 OLFML3Q9NRN5 406 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 PANK4Q9NVE7 773 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 RMND1Q9NWS8 449 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 GTF2IRD1Q9UHL9 959 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 KCNG1Q9UIX4 513 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 MAN1B1Q9UKM7 699 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 TRPC6Q9Y210 931 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 PCDHA2Q9Y5H9 948 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 COL4A3BPQ9Y5P4 624 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 GRIN2DO15399 1336 aa7.98□□□□□ -1.13
NUP54-204ENST00000506098 TTC3P53804 2025 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 SMIM35A0A1B0GVV1 85 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 SYCE3A1L190 88 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 RSPH10B2B2RC85 870 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 KBTBD13C9JR72 458 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 ASAP2O43150 1006 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 KRT18P05783 430 aaKnown RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 RSPH10BP0C881 870 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 GNAT1P11488 350 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 PLS3P13797 630 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 BMP6P22004 513 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 GJA8P48165 433 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 MNX1P50219 401 aaPredicted RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 NCKAP1LP55160 1127 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 POU5F1BQ06416 359 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 RAD51AP2Q09MP3 1159 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 MKRN4PQ13434 485 aaPredicted RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 HIC1Q14526 733 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 HSP90AA2PQ14568 343 aaPredicted RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 CT47A1Q5JQC4 288 aaPredicted RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 EFCAB12Q6NXP0 572 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 SASS6Q6UVJ0 657 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 LRSAM1Q6UWE0 723 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 TRMT1LQ7Z2T5 733 aaKnown RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 RETREG2Q8NC44 543 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 LMBR1Q8WVP7 490 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 TRAPPC12Q8WVT3 735 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 TCP11Q8WWU5 503 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 GLT1D1Q96MS3 346 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 STRA6Q9BX79 667 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 MCOLN1Q9GZU1 580 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 ST6GALNAC4Q9H4F1 302 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 PARVGQ9HBI0 331 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 EXOC1Q9NV70 894 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 SETD4Q9NVD3 440 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 LARSQ9P2J5 1176 aaKnown RBP7.97□□□□□ -1.13
NUP54-204ENST00000506098 HDAC6Q9UBN7 1215 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 PTPRSQ13332 1948 aa7.97□□□□□ -1.13
NUP54-204ENST00000506098 LTBP2Q14767 1821 aa7.96□□□□□ -1.13
NUP54-204ENST00000506098 FNDC1Q4ZHG4 1894 aaPredicted RBP7.96□□□□□ -1.13
NUP54-204ENST00000506098 A0A1W2PQ45 241 aaPredicted RBP7.96□□□□□ -1.14
NUP54-204ENST00000506098 A0A1W2PQY0 241 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 C17orf102A2RUQ5 167 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 SFI1A8K8P3 1242 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 ABCB7O75027 752 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 TBCAO75347 108 aaKnown RBP7.96□□□□□ -1.14
NUP54-204ENST00000506098 PPP1R37O75864 691 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 FAM13AO94988 1023 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 CCDC192P0DO97 292 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 IDEP14735 1019 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 SCP2P22307 547 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 TMOD1P28289 359 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 PPP1R2P41236 205 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 DNM2P50570 870 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 CDK7P50613 346 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 CDC42EP1Q00587 391 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 TYRO3Q06418 890 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 STK4Q13043 487 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 ITGA7Q13683 1181 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 MXD4Q14582 209 aaPredicted RBP7.96□□□□□ -1.14
NUP54-204ENST00000506098 PPP2R5AQ15172 486 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 STX1AQ16623 288 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 HERC4Q5GLZ8 1057 aaPredicted RBP7.96□□□□□ -1.14
NUP54-204ENST00000506098 FAM26FQ5R3K3 315 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 FAM102BQ5T8I3 360 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 EPM2AIP1Q7L775 607 aaPredicted RBP7.96□□□□□ -1.14
NUP54-204ENST00000506098 ZNF720Q7Z2F6 126 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 RPAINQ86UA6 219 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 SFR1Q86XK3 245 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 ZNF710Q8N1W2 664 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 MYCT1Q8N699 235 aa7.96□□□□□ -1.14
NUP54-204ENST00000506098 C7orf31Q8N865 590 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms