RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 ZNF787Q6DD87 383 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 MRPL14Q6P1L8 145 aaKnown RBP6.8□□□□□ -1.32
SSBP1-213ENST00000496622 MOB2Q70IA6 237 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 DCAF4Q8WV16 495 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 CEP89Q96ST8 783 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 TANGO6Q9C0B7 1094 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 VCPKMTQ9H867 229 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 RAB6BQ9NRW1 208 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 PCDHB11Q9Y5F2 797 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 ZHX2Q9Y6X8 837 aa6.8□□□□□ -1.32
SSBP1-213ENST00000496622 SBF1O95248 1867 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 TEX33O43247 280 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 CHMP2AO43633 222 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 ASNSP08243 561 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 PRCPP42785 496 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 SMCPP49901 116 aaPredicted RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 UBASH3AP57075 661 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 ARHGAP4P98171 946 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 STK4Q13043 487 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 GRB10Q13322 594 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 PREPLQ4J6C6 727 aaPredicted RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 MUM1L1Q5H9M0 696 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 SFMBT2Q5VUG0 894 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 TMC6Q7Z403 805 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 FMNL3Q8IVF7 1028 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 RBM12BQ8IXT5 1001 aaKnown RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 IGSF22Q8N9C0 903 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 ZNF483Q8TF39 744 aaPredicted RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 MRFAP1L1Q96HT8 127 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 RAVER2Q9HCJ3 691 aaKnown RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 RNF181Q9P0P0 153 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 DDX41Q9UJV9 622 aaKnown RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 PCDHA12Q9UN75 941 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 CTNND2Q9UQB3 1225 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 NPHP3-ACAD11A0A0J9YXS1 232 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 SPDYE3A6NKU9 549 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 USP27XA6NNY8 438 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 E9PMD0 336 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 H7C1D1 291 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 FLOT1O75955 427 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 RPN1P04843 607 aaKnown RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 IDEP14735 1019 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 TXLNAP40222 546 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 CCT6AP40227 531 aaKnown RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 HMGCS2P54868 508 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 PSMC6P62333 389 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 EFCAB13Q8IY85 973 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 LINC00528Q8N1L1 170 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 MYO1HQ8N1T3 1032 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 SNX29Q8TEQ0 813 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 PNMA5Q96PV4 448 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 SH2D3AQ9BRG2 576 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 SLC39A2Q9NP94 309 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 BLOC1S4Q9NUP1 217 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 GPRC5DQ9NZD1 345 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 HOOK1Q9UJC3 728 aaKnown RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 RIPK3Q9Y572 518 aa6.79□□□□□ -1.32
SSBP1-213ENST00000496622 V9GYY5 206 aaPredicted RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 LAMA2P24043 3122 aaKnown RBP6.79□□□□□ -1.32
SSBP1-213ENST00000496622 DICER1Q9UPY3 1922 aaKnown RBP6.78□□□□□ -1.32
SSBP1-213ENST00000496622 HTTP42858 3142 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 TRIM64CA6NLI5 447 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 HMGB1P1B2RPK0 211 aaPredicted RBP6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ADM5C9JUS6 153 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ZSCAN9O15535 394 aaPredicted RBP6.78□□□□□ -1.32
SSBP1-213ENST00000496622 CAVIN2O95810 425 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 MMEP08473 750 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 BMP2P12643 396 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 VEGFBP49765 207 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 LRRC41Q15345 812 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 LDHDQ86WU2 507 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 MEIOBQ8N635 442 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 UCN2Q96RP3 112 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 INSM2Q96T92 566 aaPredicted RBP6.78□□□□□ -1.32
SSBP1-213ENST00000496622 FGFBP2Q9BYJ0 223 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 KBTBD4Q9NVX7 518 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 TRMT1Q9NXH9 659 aaKnown RBP6.78□□□□□ -1.32
SSBP1-213ENST00000496622 RGL1Q9NZL6 768 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 COL20A1Q9P218 1284 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ZNF536O15090 1300 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 MYMKA6NI61 221 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 DDX39AO00148 427 aaKnown RBP6.78□□□□□ -1.32
SSBP1-213ENST00000496622 SORBS3O60504 671 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ALAS1P13196 640 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ASIC1P78348 528 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ZBED6P86452 979 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 SNX1Q13596 522 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 C4orf46Q504U0 113 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 FKBP1CQ5VVH2 108 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 ARMCX5Q6P1M9 558 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 SARM1Q6SZW1 724 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 LSM14AQ8ND56 463 aaKnown RBP6.78□□□□□ -1.32
SSBP1-213ENST00000496622 VPS37AQ8NEZ2 397 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 IL31RAQ8NI17 732 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 CPLX3Q8WVH0 158 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 LENG9Q96B70 501 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 GSDMAQ96QA5 445 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 TRIM9Q9C026 710 aa6.78□□□□□ -1.32
SSBP1-213ENST00000496622 VPS33BQ9H267 617 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms