RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SLC5A5Q92911 643 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 RNPC3Q96LT9 517 aaKnown RBP19.54■□□□□ 0.72
VIM-206ENST00000487938 NEUROG2Q9H2A3 272 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 AMACRQ9UHK6 382 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 BCS1LQ9Y276 419 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 SAMM50Q9Y512 469 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 ENTPD3O75355 529 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 ODR4Q5SWX8 454 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 BANK1Q8NDB2 785 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 OLIG1Q8TAK6 271 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 SLC35G2Q8TBE7 412 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 STK33Q9BYT3 514 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 UNC45AQ9H3U1 944 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 KIF13BQ9NQT8 1826 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 CLRN2A0PK11 232 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 CHRNA5P30532 468 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 ARHGAP44Q17R89 818 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 CEP85LQ5SZL2 805 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 ZNF577Q9BSK1 485 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 CENPHQ9H3R5 247 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 AGPAT3Q9NRZ7 376 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 SUCLA2Q9P2R7 463 aaPredicted RBP19.53■□□□□ 0.72
VIM-206ENST00000487938 FRMD4BQ9Y2L6 1034 aa19.53■□□□□ 0.72
VIM-206ENST00000487938 A0A0A6YYK5 440 aaPredicted RBP19.52■□□□□ 0.72
VIM-206ENST00000487938 DDX39AO00148 427 aaKnown RBP19.52■□□□□ 0.72
VIM-206ENST00000487938 EBAG9O00559 213 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 HSPA9P38646 679 aaKnown RBP19.52■□□□□ 0.72
VIM-206ENST00000487938 MAGEA9P43362 315 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 GUCY1A3Q02108 690 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 SLC15A2Q16348 729 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 HS2ST1Q7LGA3 356 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 OR2W6PQ8NHA6 318 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 GPR88Q9GZN0 384 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 ARHGEF10LQ9HCE6 1279 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 SEPT11Q9NVA2 429 aaKnown RBP19.52■□□□□ 0.72
VIM-206ENST00000487938 PKD2L1Q9P0L9 805 aa19.52■□□□□ 0.72
VIM-206ENST00000487938 H0YIN7 160 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 BUB1BO60566 1050 aaPredicted RBP19.51■□□□□ 0.71
VIM-206ENST00000487938 ANXA13P27216 316 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 FLT3P36888 993 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 HSD17B3P37058 310 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 CEP55Q53EZ4 464 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 CC2D2BQ6DHV5 1058 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 CD302Q8IX05 232 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 SYCE1Q8N0S2 351 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 NACC1Q96RE7 527 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 CELF4Q9BZC1 486 aaKnown RBP19.51■□□□□ 0.71
VIM-206ENST00000487938 AMFRQ9UKV5 643 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 INTUQ9ULD6 942 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 PPP1R9AQ9ULJ8 1098 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 ATRNL1Q5VV63 1379 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 NAA35Q5VZE5 725 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 SYCP3Q8IZU3 236 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 RASGEF1CQ8N431 466 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 HOOK2Q96ED9 719 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 HES6Q96HZ4 224 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 CALR3Q96L12 384 aaKnown RBP19.51■□□□□ 0.71
VIM-206ENST00000487938 INTS2Q9H0H0 1204 aaKnown RBP19.51■□□□□ 0.71
VIM-206ENST00000487938 TAS2R14Q9NYV8 317 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 IGSF9BQ9UPX0 1349 aa19.51■□□□□ 0.71
VIM-206ENST00000487938 TTI1O43156 1089 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 DAPK3O43293 454 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 ATP6V1G3Q96LB4 118 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 DMAC2Q9NW81 257 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 EXOC3O60645 756 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 LRRN2O75325 713 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 NR1D1P20393 614 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 LMNB1P20700 586 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 NPEPPSP55786 919 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 SLC20A2Q08357 652 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 CUL1Q13616 776 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 UAP1Q16222 522 aaPredicted RBP19.5■□□□□ 0.71
VIM-206ENST00000487938 NFIL3Q16649 462 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 PHLDB3Q6NSJ2 640 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 KDM7AQ6ZMT4 941 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 ADAT2Q7Z6V5 191 aaKnown RBP19.5■□□□□ 0.71
VIM-206ENST00000487938 KCTD17Q8N5Z5 321 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 ARHGEF26Q96DR7 871 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 LXNQ9BS40 222 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 PCIF1Q9H4Z3 704 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 TMX2Q9Y320 296 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 NR2E1Q9Y466 385 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 FRMPD4Q14CM0 1322 aa19.5■□□□□ 0.71
VIM-206ENST00000487938 YDJCA8MPS7 323 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 TULP1O00294 542 aaPredicted RBP19.49■□□□□ 0.71
VIM-206ENST00000487938 HIP1RO75146 1068 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 VIL1P09327 827 aaKnown RBP19.49■□□□□ 0.71
VIM-206ENST00000487938 TNFAIP3P21580 790 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 ZNF131P52739 623 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 PRPF4BQ13523 1007 aaKnown RBP19.49■□□□□ 0.71
VIM-206ENST00000487938 PALB2Q86YC2 1186 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 MKNK1Q9BUB5 465 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 GOPCQ9HD26 462 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 FBXO28Q9NVF7 368 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 FAM169AQ9Y6X4 670 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 SLX4Q8IY92 1834 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 TISP43B9A030 160 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 CCDC188H7C350 402 aa19.49■□□□□ 0.71
VIM-206ENST00000487938 FOXN3O00409 490 aaPredicted RBP19.49■□□□□ 0.71
VIM-206ENST00000487938 FGGP02679 453 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms