RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	ORC3	Q9UBD5	711 aa	Predicted RBP	13.99	□□□□□ -0.17
SREBF1-215	ENST00000487401	SLC37A4	O43826	429 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	DKC1	O60832	514 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	LTBR	P36941	435 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	AK2	P54819	239 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	UBE3A	Q05086	875 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	PPP4R3A	Q6IN85	833 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	PIK3AP1	Q6ZUJ8	805 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	THNSL1	Q8IYQ7	743 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	RNF169	Q8NCN4	708 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	JPH2	Q9BR39	696 aa	Predicted RBP	13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	TMEM117	Q9H0C3	514 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	BRMS1	Q9HCU9	246 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	CD320	Q9NPF0	282 aa		13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	SUCLA2	Q9P2R7	463 aa	Predicted RBP	13.98	□□□□□ -0.17
SREBF1-215	ENST00000487401	BDP1	A6H8Y1	2624 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	TMEM150B	A6NC51	233 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	DTNB	O60941	627 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	FGF18	O76093	207 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	STBD1	O95210	358 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	BAG4	O95429	457 aa	Known RBP	13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	LAG3	P18627	525 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	FGFR4	P22455	802 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	IRS1	P35568	1242 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	QARS	P47897	775 aa	Known RBP	13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	NDUFV1	P49821	464 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	ADAM15	Q13444	863 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	TMEM31	Q5JXX7	168 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	RBM23	Q86U06	439 aa	Known RBP	13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	ECHDC2	Q86YB7	292 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	NECAB1	Q8N987	351 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	COLGALT1	Q8NBJ5	622 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	OXER1	Q8TDS5	423 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	SH2D3A	Q9BRG2	576 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	INO80B	Q9C086	356 aa	Predicted RBP	13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	TLE6	Q9H808	572 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	GJB4	Q9NTQ9	266 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	DACT1	Q9NYF0	836 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	PRKAG3	Q9UGI9	489 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	PUF60	Q9UHX1	559 aa	Known RBP	13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	PTPRS	Q13332	1948 aa		13.97	□□□□□ -0.17
SREBF1-215	ENST00000487401	DOCK5	Q9H7D0	1870 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	IGKV6-21	A0A0C4DH24	114 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	PI4K2B	G5E9Z4	385 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	EML1	O00423	815 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	LINC01565	O15544	149 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	MAF	O75444	373 aa	Predicted RBP	13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	CSDE1	O75534	798 aa	Known RBP	13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	CTDNEP1	O95476	244 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	P4HB	P07237	508 aa	Known RBP	13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	KRT2	P35908	639 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	NRIP1	P48552	1158 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	DLX2	Q07687	328 aa	Predicted RBP	13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	PPP2R5C	Q13362	524 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	DRP2	Q13474	957 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	RHPN2	Q8IUC4	686 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	EXOC8	Q8IYI6	725 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	EFHB	Q8N7U6	833 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	CASD1	Q96PB1	797 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	CWH43	Q9H720	699 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	KCNMB3	Q9NPA1	279 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	TLR9	Q9NR96	1032 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	CHST12	Q9NRB3	414 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	CD207	Q9UJ71	328 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	VAV3	Q9UKW4	847 aa		13.96	□□□□□ -0.17
SREBF1-215	ENST00000487401	COL4A4	P53420	1690 aa	Predicted RBP	13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401		A0A087WZ62	844 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401		A0A0U1RQF3	1178 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	TBX3	O15119	743 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	EOMES	O95936	686 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	ALAD	P13716	330 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	SFPQ	P23246	707 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	NEK4	P51957	841 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	KRT17	Q04695	432 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	SMAD4	Q13485	552 aa	Known RBP	13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	EPHA7	Q15375	998 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	PLA2G4F	Q68DD2	849 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	PDE12	Q6L8Q7	609 aa	Known RBP	13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	ANO5	Q75V66	913 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	ADGRD2	Q7Z7M1	963 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	ZNF410	Q86VK4	478 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	ADHFE1	Q8IWW8	467 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	SLFN12	Q8IYM2	578 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	LRRC43	Q8N309	656 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	SLC7A3	Q8WY07	619 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	CEP170P1	Q96L14	293 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	ZNF558	Q96NG5	402 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	CEP89	Q96ST8	783 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	CYP26B1	Q9NR63	512 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	HCST	Q9UBK5	93 aa		13.95	□□□□□ -0.18
SREBF1-215	ENST00000487401	PER2	O15055	1255 aa		13.94	□□□□□ -0.18
SREBF1-215	ENST00000487401	MBTPS2	O43462	519 aa		13.94	□□□□□ -0.18
SREBF1-215	ENST00000487401	TBX10	O75333	385 aa		13.94	□□□□□ -0.18
SREBF1-215	ENST00000487401	SKI	P12755	728 aa		13.94	□□□□□ -0.18
SREBF1-215	ENST00000487401	PPM1A	P35813	382 aa		13.94	□□□□□ -0.18
SREBF1-215	ENST00000487401	POLG	P54098	1239 aa	Predicted RBP	13.94	□□□□□ -0.18
SREBF1-215	ENST00000487401	NPEPPS	P55786	919 aa		13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms