RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ATG7O95352 703 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 SSBP05455 408 aaKnown RBP eCLIP8.97□□□□□ -0.97
USP40-216ENST00000485943 ZSCAN20P17040 1043 aaPredicted RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 MRPS6P82932 125 aaKnown RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 CDC42EP1Q00587 391 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 TMEM62Q0P6H9 643 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 ST3GAL1Q11201 340 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 CTTNQ14247 550 aaKnown RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 NPY5RQ15761 445 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 RAB30Q15771 203 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 FOXD4L5Q5VV16 416 aaPredicted RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 MTHFD1LQ6UB35 978 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 MYOCDQ8IZQ8 938 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 SNX29Q8TEQ0 813 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 TRAPPC12Q8WVT3 735 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 CRYGNQ8WXF5 182 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 FOXD4L4Q8WXT5 416 aaPredicted RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 CALML4Q96GE6 196 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 DYDC2Q96IM9 177 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 ARID3AQ99856 593 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 EIF2AK1Q9BQI3 630 aaKnown RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.97□□□□□ -0.97
USP40-216ENST00000485943 IFIH1Q9BYX4 1025 aaKnown RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 INO80BQ9C086 356 aaPredicted RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 PCDHA2Q9Y5H9 948 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 ATP6V1DQ9Y5K8 247 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 MAFBQ9Y5Q3 323 aaPredicted RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 CDY2AQ9Y6F7 541 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 UMODL1Q5DID0 1318 aa8.97□□□□□ -0.97
USP40-216ENST00000485943 TNRC18O15417 2968 aaPredicted RBP8.97□□□□□ -0.97
USP40-216ENST00000485943 LTBP2Q14767 1821 aa8.96□□□□□ -0.97
USP40-216ENST00000485943 TANC1Q9C0D5 1861 aa8.96□□□□□ -0.97
USP40-216ENST00000485943 WDR81Q562E7 1941 aa8.96□□□□□ -0.97
USP40-216ENST00000485943 VWA3AA6NCI4 1184 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 GPR182O15218 404 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 DHX15O43143 795 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 ACTN4O43707 911 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 GAS2O43903 313 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 GPR37L1O60883 481 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 RPS6KA5O75582 802 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 BAIAP3O94812 1187 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 UPP2O95045 317 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 KRT18P05783 430 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 GHRP10912 638 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 ATP2A2P16615 1042 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 U2AF2P26368 475 aaKnown RBP eCLIP8.96□□□□□ -0.984e-6■■■□□ 15.7
USP40-216ENST00000485943 YWHABP31946 246 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 UBA7P41226 1012 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 CEBPZQ03701 1054 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 CUL4AQ13619 759 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 TFDP1Q14186 410 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 STK38Q15208 465 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 KMT5BQ4FZB7 885 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 EARS2Q5JPH6 523 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 SPOUT1Q5T280 376 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 USP38Q8NB14 1042 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 SYMPKQ92797 1274 aaKnown RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 LENG9Q96B70 501 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 NACC1Q96RE7 527 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 SLC9A7Q96T83 725 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 MTRQ99707 1265 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 GCOM2Q9BZD3 368 aaPredicted RBP8.96□□□□□ -0.98
USP40-216ENST00000485943 NT5C3AQ9H0P0 336 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 SLC28A3Q9HAS3 691 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 ATP6V0A4Q9HBG4 840 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 TUFT1Q9NNX1 390 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 KCNMB3Q9NPA1 279 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 PPME1Q9Y570 386 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 IGSF9BQ9UPX0 1349 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 KDM3AQ9Y4C1 1321 aa8.96□□□□□ -0.98
USP40-216ENST00000485943 SCN5AQ14524 2016 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 ABHD14A-ACY1A0A1B0GW23 586 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 TLL1O43897 1013 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 ERLIN2O94905 339 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 VTNP04004 478 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 STAG3L1P0CL83 205 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 SYT1P21579 422 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 SFPQP23246 707 aaKnown RBP eCLIP8.95□□□□□ -0.98
USP40-216ENST00000485943 ITGB8P26012 769 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 CLCN3P51790 818 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 FOXD4L6Q3SYB3 417 aaPredicted RBP8.95□□□□□ -0.98
USP40-216ENST00000485943 TMEM240Q5SV17 173 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 C9orf50Q5SZB4 431 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 PLA2G4FQ68DD2 849 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 FAM117BQ6P1L5 589 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 FOXD4L3Q6VB84 417 aaPredicted RBP8.95□□□□□ -0.98
USP40-216ENST00000485943 RUFY4Q6ZNE9 571 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 TSHZ1Q6ZSZ6 1077 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 RHPN2Q8IUC4 686 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 C4orf19Q8IY42 314 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 ABI1Q8IZP0 508 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 LRRC71Q8N4P6 559 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 PSPC1Q8WXF1 523 aaKnown RBP8.95□□□□□ -0.98
USP40-216ENST00000485943 TNFRSF25Q93038 417 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 IFT74Q96LB3 600 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 NLRP4Q96MN2 994 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 MBOAT7Q96N66 472 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 YME1L1Q96TA2 773 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 PCYT2Q99447 389 aa8.95□□□□□ -0.98
USP40-216ENST00000485943 FTHL17Q9BXU8 183 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms