RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SARSP49591 514 aaKnown RBP18.6■□□□□ 0.57
TRIM54-203ENST00000485306 PPP2R5CQ13362 524 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 SLC24A5Q71RS6 500 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 LRRC71Q8N4P6 559 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 TMEM40Q8WWA1 233 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 HAS1Q92839 578 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 MRPL38Q96DV4 380 aaKnown RBP18.6■□□□□ 0.57
TRIM54-203ENST00000485306 ADAM2Q99965 735 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 TMX1Q9H3N1 280 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 RGS18Q9NS28 235 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 CHMP5Q9NZZ3 219 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 VAV3Q9UKW4 847 aa18.6■□□□□ 0.57
TRIM54-203ENST00000485306 P4HBP07237 508 aaKnown RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 ZSCAN22P10073 491 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 QARSP47897 775 aaKnown RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 TARBP2Q15633 366 aaKnown RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 MTERF2Q49AM1 385 aa18.59■□□□□ 0.57
TRIM54-203ENST00000485306 MCTP1Q6DN14 999 aa18.59■□□□□ 0.57
TRIM54-203ENST00000485306 BRAPQ7Z569 592 aa18.59■□□□□ 0.57
TRIM54-203ENST00000485306 CMTR2Q8IYT2 770 aaKnown RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 CRIPAKQ8N1N5 446 aa18.59■□□□□ 0.57
TRIM54-203ENST00000485306 LINC01465Q8N7H1 131 aa18.59■□□□□ 0.57
TRIM54-203ENST00000485306 BANK1Q8NDB2 785 aa18.59■□□□□ 0.57
TRIM54-203ENST00000485306 CLP1Q92989 425 aaKnown RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 SCLT1Q96NL6 688 aa18.59■□□□□ 0.57
TRIM54-203ENST00000485306 JPH2Q9BR39 696 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 C11orf84Q9BUA3 381 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 RC3H2Q9HBD1 1191 aaKnown RBP18.59■□□□□ 0.57
TRIM54-203ENST00000485306 C5orf67F2Z3F1 127 aa18.58■□□□□ 0.56
TRIM54-203ENST00000485306 ZSCAN20P17040 1043 aaPredicted RBP18.58■□□□□ 0.56
TRIM54-203ENST00000485306 EIF4BP23588 611 aaKnown RBP18.58■□□□□ 0.56
TRIM54-203ENST00000485306 FAM228AQ86W67 206 aa18.58■□□□□ 0.56
TRIM54-203ENST00000485306 NOSTRINQ8IVI9 506 aa18.58■□□□□ 0.56
TRIM54-203ENST00000485306 EXOC8Q8IYI6 725 aa18.58■□□□□ 0.56
TRIM54-203ENST00000485306 PLVAPQ9BX97 442 aa18.58■□□□□ 0.56
TRIM54-203ENST00000485306 ADAMTS10Q9H324 1103 aa18.58■□□□□ 0.56
TRIM54-203ENST00000485306 EML1O00423 815 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 WNT7AO00755 349 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 IBSPP21815 317 aaPredicted RBP18.57■□□□□ 0.56
TRIM54-203ENST00000485306 GPC3P51654 580 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 TFF2Q03403 129 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 EPHA7Q15375 998 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 TIGD5Q53EQ6 642 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 NLRP7Q8WX94 980 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 LMAN2LQ9H0V9 348 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 ATP6V1DQ9Y5K8 247 aa18.57■□□□□ 0.56
TRIM54-203ENST00000485306 MGEA5O60502 916 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 STBD1O95210 358 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 F13A1P00488 732 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 TRAPPC10P48553 1259 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 RESTQ13127 1097 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 NAALADL2Q58DX5 795 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 OTUD6AQ7L8S5 288 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 ADAMTS19Q8TE59 1207 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 GCOM2Q9BZD3 368 aaPredicted RBP18.56■□□□□ 0.56
TRIM54-203ENST00000485306 INO80BQ9C086 356 aaPredicted RBP18.56■□□□□ 0.56
TRIM54-203ENST00000485306 ATP6V0A4Q9HBG4 840 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 PCDHA12Q9UN75 941 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 PPME1Q9Y570 386 aa18.56■□□□□ 0.56
TRIM54-203ENST00000485306 IGKV6-21A0A0C4DH24 114 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 C9IYK1 514 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 NEMFO60524 1076 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 MAFO75444 373 aaPredicted RBP18.55■□□□□ 0.56
TRIM54-203ENST00000485306 BMP1P13497 986 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 DARSP14868 501 aaKnown RBP18.55■□□□□ 0.56
TRIM54-203ENST00000485306 FAM189BP81408 668 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 CALCRLQ16602 461 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 PAN2Q504Q3 1202 aaKnown RBP18.55■□□□□ 0.56
TRIM54-203ENST00000485306 NCAPH2Q6IBW4 605 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 ANO5Q75V66 913 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 SLC7A3Q8WY07 619 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 P2RX5Q93086 422 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 ELAC1Q9H777 363 aaKnown RBP18.55■□□□□ 0.56
TRIM54-203ENST00000485306 CYP26B1Q9NR63 512 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 TMEM161AQ9NX61 479 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 SUCLA2Q9P2R7 463 aaPredicted RBP18.55■□□□□ 0.56
TRIM54-203ENST00000485306 NOL7Q9UMY1 257 aaKnown RBP18.55■□□□□ 0.56
TRIM54-203ENST00000485306 MRPL42Q9Y6G3 142 aaKnown RBP18.55■□□□□ 0.56
TRIM54-203ENST00000485306 VCANP13611 3396 aa18.55■□□□□ 0.56
TRIM54-203ENST00000485306 TMEM150BA6NC51 233 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 ATP2B1P20020 1258 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 SPIRE1Q08AE8 756 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 PKP1Q13835 747 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 DSC3Q14574 896 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 RILPL1Q5EBL4 403 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 SPOUT1Q5T280 376 aaKnown RBP18.54■□□□□ 0.56
TRIM54-203ENST00000485306 FERMT3Q86UX7 667 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 C4orf19Q8IY42 314 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 ZNF668Q96K58 619 aaPredicted RBP18.54■□□□□ 0.56
TRIM54-203ENST00000485306 CEP170P1Q96L14 293 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 CEP89Q96ST8 783 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 UHRF1Q96T88 793 aaPredicted RBP18.54■□□□□ 0.56
TRIM54-203ENST00000485306 SH2D3AQ9BRG2 576 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 NSUN3Q9H649 340 aaKnown RBP18.54■□□□□ 0.56
TRIM54-203ENST00000485306 ZSWIM4Q9H7M6 989 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 AAASQ9NRG9 546 aa18.54■□□□□ 0.56
TRIM54-203ENST00000485306 TNFRSF10AO00220 468 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 HOXA2O43364 376 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 NCK2O43639 380 aa18.53■□□□□ 0.56
TRIM54-203ENST00000485306 LINC00271P0C7V0 271 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms