RNA–Protein interactions for RNA: ENST00000482519.1

VAMP4-204, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 3

Gene VAMP4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-204ENST00000482519 NPAS4Q8IUM7 802 aa18.52■□□□□ 0.56
VAMP4-204ENST00000482519 ZNF710Q8N1W2 664 aa18.52■□□□□ 0.56
VAMP4-204ENST00000482519 JPH2Q9BR39 696 aaPredicted RBP18.52■□□□□ 0.56
VAMP4-204ENST00000482519 SMC3Q9UQE7 1217 aa18.52■□□□□ 0.56
VAMP4-204ENST00000482519 PCDHB7Q9Y5E2 793 aa18.52■□□□□ 0.56
VAMP4-204ENST00000482519 MTCH2Q9Y6C9 303 aa18.52■□□□□ 0.56
VAMP4-204ENST00000482519 IGKV6-21A0A0C4DH24 114 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 DGKIO75912 1065 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 OR52Z1P0C646 297 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 DARSP14868 501 aaKnown RBP18.51■□□□□ 0.55
VAMP4-204ENST00000482519 FGFR4P22455 802 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 PAN2Q504Q3 1202 aaKnown RBP18.51■□□□□ 0.55
VAMP4-204ENST00000482519 EPC2Q52LR7 807 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 KSR1Q8IVT5 923 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 TMEM143Q96AN5 459 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 NLRP4Q96MN2 994 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 CCDC43Q96MW1 224 aaKnown RBP18.51■□□□□ 0.55
VAMP4-204ENST00000482519 HSD17B14Q9BPX1 270 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 GCOM2Q9BZD3 368 aaPredicted RBP18.51■□□□□ 0.55
VAMP4-204ENST00000482519 PRDM6Q9NQX0 595 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 RGS18Q9NS28 235 aa18.51■□□□□ 0.55
VAMP4-204ENST00000482519 COL4A4P53420 1690 aaPredicted RBP18.5■□□□□ 0.55
VAMP4-204ENST00000482519 ADGRA3Q8IWK6 1321 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 UNC80Q8N2C7 3258 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 PRRC2BQ5JSZ5 2229 aaKnown RBP18.5■□□□□ 0.55
VAMP4-204ENST00000482519 A0A087WWV3 80 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 A0A087WZ62 844 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 LPXNO60711 386 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 ZSCAN20P17040 1043 aaPredicted RBP18.5■□□□□ 0.55
VAMP4-204ENST00000482519 U2AF2P26368 475 aaKnown RBP eCLIP18.5■□□□□ 0.55
VAMP4-204ENST00000482519 RFC5P40937 340 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 TRAPPC10P48553 1259 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 SARSP49591 514 aaKnown RBP18.5■□□□□ 0.55
VAMP4-204ENST00000482519 GATMP50440 423 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 CDC42EP1Q00587 391 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 SLC24A5Q71RS6 500 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 TMEM192Q8IY95 271 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 EXOC8Q8IYI6 725 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 FDXACB1Q9BRP7 624 aaPredicted RBP18.5■□□□□ 0.55
VAMP4-204ENST00000482519 C1orf112Q9NSG2 853 aa18.5■□□□□ 0.55
VAMP4-204ENST00000482519 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.5■□□□□ 0.55
VAMP4-204ENST00000482519 SRGAP2CP0DJJ0 459 aa18.49■□□□□ 0.55
VAMP4-204ENST00000482519 CTNNB1P35222 781 aa18.49■□□□□ 0.55
VAMP4-204ENST00000482519 ORC2Q13416 577 aaPredicted RBP18.49■□□□□ 0.55
VAMP4-204ENST00000482519 EMC2Q15006 297 aa18.49■□□□□ 0.55
VAMP4-204ENST00000482519 NEK9Q8TD19 979 aa18.49■□□□□ 0.55
VAMP4-204ENST00000482519 PIGOQ8TEQ8 1089 aa18.49■□□□□ 0.55
VAMP4-204ENST00000482519 PRPF31Q8WWY3 499 aaKnown RBP18.49■□□□□ 0.55
VAMP4-204ENST00000482519 ZNF689Q96CS4 500 aaPredicted RBP18.49■□□□□ 0.55
VAMP4-204ENST00000482519 SAMD11Q96NU1 681 aa18.49■□□□□ 0.55
VAMP4-204ENST00000482519 NLRC5Q86WI3 1866 aa18.49■□□□□ 0.55
VAMP4-204ENST00000482519 A0A0C4DFX4 3053 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 TOB1P50616 345 aaPredicted RBP18.48■□□□□ 0.55
VAMP4-204ENST00000482519 GPM6BQ13491 265 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 CRIPAKQ8N1N5 446 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 RNF169Q8NCN4 708 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 ERMNQ8TAM6 284 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 DHX33Q9H6R0 707 aaKnown RBP18.48■□□□□ 0.55
VAMP4-204ENST00000482519 RC3H2Q9HBD1 1191 aaKnown RBP18.48■□□□□ 0.55
VAMP4-204ENST00000482519 RNF216Q9NWF9 866 aaPredicted RBP18.48■□□□□ 0.55
VAMP4-204ENST00000482519 PPME1Q9Y570 386 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 PCDHB6Q9Y5E3 794 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 COL4A3BPQ9Y5P4 624 aa18.48■□□□□ 0.55
VAMP4-204ENST00000482519 ARID2Q68CP9 1835 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 C9IYK1 514 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 LYPLA2O95372 231 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 POU3F3P20264 500 aaPredicted RBP18.47■□□□□ 0.55
VAMP4-204ENST00000482519 SFPQP23246 707 aaKnown RBP eCLIP18.47■□□□□ 0.55
VAMP4-204ENST00000482519 DSC3Q14574 896 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 FAM102BQ5T8I3 360 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 LARP1BQ659C4 914 aaKnown RBP18.47■□□□□ 0.55
VAMP4-204ENST00000482519 FAM43BQ6ZT52 329 aaPredicted RBP18.47■□□□□ 0.55
VAMP4-204ENST00000482519 ZNF410Q86VK4 478 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 CATSPER3Q86XQ3 398 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 TCP11Q8WWU5 503 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 PSPC1Q8WXF1 523 aaKnown RBP18.47■□□□□ 0.55
VAMP4-204ENST00000482519 MTRQ99707 1265 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 ATP6V0A4Q9HBG4 840 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 ANKEF1Q9NU02 776 aa18.47■□□□□ 0.55
VAMP4-204ENST00000482519 MRPL42Q9Y6G3 142 aaKnown RBP18.47■□□□□ 0.55
VAMP4-204ENST00000482519 TBKBP1A7MCY6 615 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 MED24O75448 989 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 SPATA31C1P0DKV0 1188 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 FGFR1P11362 822 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 BMPR1AP36894 532 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 LAMTOR4Q0VGL1 99 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 PTGDRQ13258 359 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 CMTR2Q8IYT2 770 aaKnown RBP18.46■□□□□ 0.55
VAMP4-204ENST00000482519 INO80BQ9C086 356 aaPredicted RBP18.46■□□□□ 0.55
VAMP4-204ENST00000482519 RWDD3Q9Y3V2 267 aa18.46■□□□□ 0.55
VAMP4-204ENST00000482519 COL4A6Q14031 1691 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 H3BNC9 293 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 CSPG5O95196 566 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 PTPROQ16827 1216 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 SPOUT1Q5T280 376 aaKnown RBP18.45■□□□□ 0.54
VAMP4-204ENST00000482519 POTEGQ6S5H5 508 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 CATSPER4Q7RTX7 472 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 C4orf32Q8N8J7 132 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 TUFT1Q9NNX1 390 aa18.45■□□□□ 0.54
VAMP4-204ENST00000482519 TMEM161AQ9NX61 479 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms