RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 MFSD5Q6N075 450 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 RINT1Q6NUQ1 792 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 C1orf186Q6ZWK4 172 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 SRGAP1Q7Z6B7 1085 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 ELOA2Q8IYF1 753 aaPredicted RBP9.16□□□□□ -0.94
USP54-212ENST00000480210 CEP57L1Q8IYX8 460 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 C7orf61Q8IZ16 206 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 DNAJB3Q8WWF6 145 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 APBB2Q92870 758 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 IFT74Q96LB3 600 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 NAP1L5Q96NT1 182 aaPredicted RBP9.16□□□□□ -0.94
USP54-212ENST00000480210 CTAGE1Q96RT6 745 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 LBHD1Q9BQE6 289 aaPredicted RBP9.16□□□□□ -0.94
USP54-212ENST00000480210 NFKBIZQ9BYH8 718 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 CELF4Q9BZC1 486 aaKnown RBP9.16□□□□□ -0.94
USP54-212ENST00000480210 BLOC1S4Q9NUP1 217 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 RNF216Q9NWF9 866 aaPredicted RBP9.16□□□□□ -0.94
USP54-212ENST00000480210 SUCLA2Q9P2R7 463 aaPredicted RBP9.16□□□□□ -0.94
USP54-212ENST00000480210 HOOK1Q9UJC3 728 aaKnown RBP9.16□□□□□ -0.94
USP54-212ENST00000480210 AKT3Q9Y243 479 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 HPSEQ9Y251 543 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 TRPV2Q9Y5S1 764 aa9.16□□□□□ -0.94
USP54-212ENST00000480210 GOLGA6L3A6NEY3 463 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 ZBTB39O15060 712 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 POLR2DO15514 142 aaKnown RBP9.15□□□□□ -0.94
USP54-212ENST00000480210 EFCAB14O75071 495 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 SLFN14P0C7P3 912 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 ARL2P36404 184 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 SMTNP53814 917 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 HIC1Q14526 733 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 CNNM4Q6P4Q7 775 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 USP49Q70CQ1 688 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 LRRC8DQ7L1W4 858 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 IFNLR1Q8IU57 520 aaPredicted RBP9.15□□□□□ -0.94
USP54-212ENST00000480210 TRAPPC12Q8WVT3 735 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 DHX38Q92620 1227 aaKnown RBP9.15□□□□□ -0.94
USP54-212ENST00000480210 KCNN1Q92952 543 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 TIGD1Q96MW7 591 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 GCOM2Q9BZD3 368 aaPredicted RBP9.15□□□□□ -0.94
USP54-212ENST00000480210 C2orf40Q9H1Z8 148 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 PRDM5Q9NQX1 630 aaPredicted RBP9.15□□□□□ -0.94
USP54-212ENST00000480210 KBTBD4Q9NVX7 518 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 LARSQ9P2J5 1176 aaKnown RBP9.15□□□□□ -0.94
USP54-212ENST00000480210 SEL1LQ9UBV2 794 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 COL4A3BPQ9Y5P4 624 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 SCN5AQ14524 2016 aa9.15□□□□□ -0.94
USP54-212ENST00000480210 BRCA2P51587 3418 aa9.15□□□□□ -0.95
USP54-212ENST00000480210 LTBP2Q14767 1821 aa9.15□□□□□ -0.95
USP54-212ENST00000480210 TET1Q8NFU7 2136 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 A0A1B0GVL5 298 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 TRIM43BA6NCK2 446 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 GPR182O15218 404 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 USO1O60763 962 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 CAPN15O75808 1086 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 ZNF202O95125 648 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 CXCL10P02778 98 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 SSBP05455 408 aaKnown RBP eCLIP9.14□□□□□ -0.95
USP54-212ENST00000480210 KRT18P05783 430 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 MAPTP10636 758 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 ACTN1P12814 892 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 PFKFB1P16118 471 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 GAP43P17677 238 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 NAMPTP43490 491 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 GPC3P51654 580 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 NLRP11P59045 1033 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 NCBP1Q09161 790 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 MGAT3Q09327 533 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 MCM6Q14566 821 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 E2F4Q16254 413 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 NAALADL2Q58DX5 795 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 ZNF618Q5T7W0 954 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 FAM102BQ5T8I3 360 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 RUFY4Q6ZNE9 571 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 KCNK18Q7Z418 384 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 PDILTQ8N807 584 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 FSIP1Q8NA03 581 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 CCDC47Q96A33 483 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 TRIM43Q96BQ3 446 aaPredicted RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 PLIN2Q99541 437 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 C7orf25Q9BPX7 421 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 NTPCRQ9BSD7 190 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 FTHL17Q9BXU8 183 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 GTPBP4Q9BZE4 634 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 FAM49AQ9H0Q0 323 aaPredicted RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 MTIF3Q9H2K0 278 aaKnown RBP9.14□□□□□ -0.95
USP54-212ENST00000480210 GDPD2Q9HCC8 539 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 XPNPEP1Q9NQW7 623 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 CDY2AQ9Y6F7 541 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 MICAL3Q7RTP6 2002 aa9.14□□□□□ -0.95
USP54-212ENST00000480210 SIP14410 1827 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PVALEFA0A1B0GWK0 134 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 TMEM150BA6NC51 233 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 TBCAO75347 108 aaKnown RBP9.13□□□□□ -0.95
USP54-212ENST00000480210 GPR32O75388 356 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 CHRNA1P02708 482 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 EIF4BP23588 611 aaKnown RBP9.13□□□□□ -0.95
USP54-212ENST00000480210 AXLP30530 894 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 BMP8BP34820 402 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 PHKA2P46019 1235 aa9.13□□□□□ -0.95
USP54-212ENST00000480210 CLCN3P51790 818 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms