RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	RFC5	P40937	340 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	GPC3	P51654	580 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	NLRP11	P59045	1033 aa	Known RBP	11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	PLEKHG4	Q58EX7	1191 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	RASIP1	Q5U651	963 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	TSHZ1	Q6ZSZ6	1077 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	MAEA	Q7L5Y9	396 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	NLRP7	Q8WX94	980 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	SEPT8	Q92599	483 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	LRCH3	Q96II8	777 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	CHAMP1	Q96JM3	812 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	NACC1	Q96RE7	527 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	MTIF3	Q9H2K0	278 aa	Known RBP	11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	DHX33	Q9H6R0	707 aa	Known RBP	11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	AGO3	Q9H9G7	860 aa	Known RBP	11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	ANKEF1	Q9NU02	776 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	SUCLA2	Q9P2R7	463 aa	Predicted RBP	11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	ZDHHC9	Q9Y397	364 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	SLC4A7	Q9Y6M7	1214 aa		11.45	□□□□□ -0.58
HDAC6-222	ENST00000478095	KDM3A	Q9Y4C1	1321 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	ARHGEF35	A5YM69	484 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095		E9PMD0	336 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	GPR32	O75388	356 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	BRD1	O95696	1058 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	PDIA4	P13667	645 aa	Known RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	NASP	P49321	788 aa	Predicted RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	DNM2	P50570	870 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	WDR5	P61964	334 aa	Known RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	PAK2	Q13177	524 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	IKBKE	Q14164	716 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	STK38	Q15208	465 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	LRIT3	Q3SXY7	679 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	SPECC1	Q5M775	1068 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	KCNK18	Q7Z418	384 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	TMCO2	Q7Z6W1	182 aa	Predicted RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	CABP7	Q86V35	215 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	RHPN2	Q8IUC4	686 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	KSR1	Q8IVT5	923 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	NLRP4	Q96MN2	994 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	ZNF396	Q96N95	335 aa	Predicted RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	CLIC6	Q96NY7	704 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	PNMA5	Q96PV4	448 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	MTR	Q99707	1265 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	JPH2	Q9BR39	696 aa	Predicted RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	CSRNP2	Q9H175	543 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	BHMT2	Q9H2M3	363 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	ADAMTS10	Q9H324	1103 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	ATP6V0A4	Q9HBG4	840 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	GPRC5C	Q9NQ84	441 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	XPNPEP1	Q9NQW7	623 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	FBXO2	Q9UK22	296 aa	Predicted RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	NOC2L	Q9Y3T9	749 aa	Known RBP	11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	PPME1	Q9Y570	386 aa		11.44	□□□□□ -0.58
HDAC6-222	ENST00000478095	TANC1	Q9C0D5	1861 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095		A0A087WZ62	844 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	CSDE1	O75534	798 aa	Known RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	DGAT1	O75907	488 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	BAIAP3	O94812	1187 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	ATP2A2	P16615	1042 aa	Known RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	FGFR4	P22455	802 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	LONP1	P36776	959 aa	Known RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	KCNJ6	P48051	423 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	FXR1	P51114	621 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	CRYBB1	P53674	252 aa	Predicted RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	DEFB103A	P81534	67 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	DNM1	Q05193	864 aa	Known RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	NFX1	Q12986	1120 aa	Known RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	GRB10	Q13322	594 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	SLC39A14	Q15043	492 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	PADI6	Q6TGC4	694 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	USP49	Q70CQ1	688 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	LINC00301	Q8NCQ3	95 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	RASSF8	Q8NHQ8	419 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	PSPC1	Q8WXF1	523 aa	Known RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	CDK5RAP3	Q96JB5	506 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	FDXACB1	Q9BRP7	624 aa	Predicted RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	DBR1	Q9UK59	544 aa	Known RBP	11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	PADI3	Q9ULW8	664 aa		11.43	□□□□□ -0.58
HDAC6-222	ENST00000478095	TRIOBP	Q9H2D6	2365 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	SPTLC2	O15270	562 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	RPS6KA5	O75582	802 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	SSB	P05455	408 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	XRCC6	P12956	609 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	NCL	P19338	710 aa	Known RBP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	IBSP	P21815	317 aa	Predicted RBP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	MUT	P22033	750 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	PBX2	P40425	430 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	UBA7	P41226	1012 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	RABGGTB	P53611	331 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	LAMTOR4	Q0VGL1	99 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	KARS	Q15046	597 aa	Known RBP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	FAM102B	Q5T8I3	360 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	FAM117B	Q6P1L5	589 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	FAM228A	Q86W67	206 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	EXOC8	Q8IYI6	725 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	MYOCD	Q8IZQ8	938 aa		11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	KRI1	Q8N9T8	703 aa	Known RBP	11.42	□□□□□ -0.58
HDAC6-222	ENST00000478095	USP38	Q8NB14	1042 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms