RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 GIT2Q14161 759 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 BMP2KLQ5H9B9 411 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 TTC22Q5TAA0 569 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 FAM43BQ6ZT52 329 aaPredicted RBP11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 NLRX1Q86UT6 975 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 TBC1D10CQ8IV04 446 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 ZBTB44Q8NCP5 570 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 BCO2Q9BYV7 579 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 RNF19AQ9NV58 838 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 ZSCAN32Q9NX65 697 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 MIA3Q5JRA6 1907 aa11.13□□□□□ -0.63
SMARCB1-206ENST00000477836 NEDD4P46934 1319 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 TTC41PQ6P2S7 1318 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 KLRF2D3W0D1 207 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 TBC1D4O60343 1298 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 PCP11498 1178 aaKnown RBP11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 KCNA2P16389 499 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 ALDH7A1P49419 539 aaKnown RBP11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 BCAR1P56945 870 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 MTHFD1LQ6UB35 978 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 C15orf39Q6ZRI6 1047 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 PPFIBP1Q86W92 1011 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 IQCA1Q86XH1 822 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 RNF169Q8NCN4 708 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 TNPO1Q92973 898 aaKnown RBP11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 NXPE3Q969Y0 559 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 MTMR8Q96EF0 704 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 PPP1R16BQ96T49 567 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 OSBPL3Q9H4L5 887 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 PKD2L1Q9P0L9 805 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 EPS15L1Q9UBC2 864 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 IRAK3Q9Y616 596 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 PATJQ8NI35 1801 aa11.12□□□□□ -0.63
SMARCB1-206ENST00000477836 LILRB5O75023 590 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 PROS1P07225 676 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 CTSAP10619 480 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 PMLP29590 882 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 STARD6P59095 220 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 CCDC178Q5BJE1 867 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 PCNX4Q63HM2 1172 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 TSSK4Q6SA08 328 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 FAM228AQ86W67 206 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 TMEM173Q86WV6 379 aaPredicted RBP11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 ST13P5Q8NFI4 369 aaPredicted RBP11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 PI4K2BQ8TCG2 481 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 STAMQ92783 540 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 MYADMQ96S97 322 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 PCYT2Q99447 389 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 OSMRQ99650 979 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 RNF41Q9H4P4 317 aaPredicted RBP11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 AZI2Q9H6S1 392 aa11.11□□□□□ -0.63
SMARCB1-206ENST00000477836 KANSL1LA0AUZ9 987 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 GSPT1P15170 499 aaKnown RBP11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 KLRC1P26715 233 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 KLRC2P26717 231 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 CLCN4P51793 760 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 POLGP54098 1239 aaPredicted RBP11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 TRAF1Q13077 416 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 DSC3Q14574 896 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 UBXN2BQ14CS0 331 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 LPAL2Q16609 132 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 CLLU1OSQ5K130 101 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 N4BP2L1Q5TBK1 243 aaPredicted RBP11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 ENAHQ8N8S7 591 aaPredicted RBP11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 HELQQ8TDG4 1101 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 SHDQ96IW2 340 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 PIGSQ96S52 555 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 ZSCAN10Q96SZ4 725 aaPredicted RBP11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 WDR6Q9NNW5 1121 aaKnown RBP11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 SLC2A4RGQ9NR83 387 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 HELLSQ9NRZ9 838 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 ZMIZ1Q9ULJ6 1067 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 MTF2Q9Y483 593 aaPredicted RBP11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 LAMA1P25391 3075 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 ZFYVE26Q68DK2 2539 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 LOC400499M0QZD8 3231 aa11.1□□□□□ -0.63
SMARCB1-206ENST00000477836 CLUHO75153 1309 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 ZMYM6O95789 1325 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 LAMA4Q16363 1823 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 COL4A3Q01955 1670 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 CCDC195A0A1B0GUA6 201 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 SOBPA7XYQ1 873 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 ZC3H11AO75152 810 aaKnown RBP eCLIP11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 SHC2P98077 582 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 SNW1Q13573 536 aaKnown RBP11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 WTAPQ15007 396 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 KIZQ2M2Z5 673 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 DDX53Q86TM3 631 aaKnown RBP11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 ECHDC2Q86YB7 292 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 KIAA0319LQ8IZA0 1049 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 SMARCC2Q8TAQ2 1214 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 BBXQ8WY36 941 aaPredicted RBP11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 DDX1Q92499 740 aaKnown RBP11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 GPRASP2Q96D09 838 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 CDHR1Q96JP9 859 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 KLHL5Q96PQ7 755 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 EMILIN2Q9BXX0 1053 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 MAD2L2Q9UI95 211 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 RAB23Q9ULC3 237 aa11.09□□□□□ -0.63
SMARCB1-206ENST00000477836 NUMBLQ9Y6R0 609 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms